Query= MSMg01no141_f16.b1 MSMg01no141_f16.b1 CHROMAT_FILE:
MSMg01no141_f16.b1 PHD_FILE: MSMg01no141_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:39 2005
(597 letters)
>mm_chr1_40838569_40839565
Length = 997
Score = 499 bits (258), Expect = e-145
Identities = 558/794 (70%), Gaps = 214/794 (26%)
Strand = Plus / Plus
Query: 1 gatttctggaccttcaataaaccctagcatccctcaggaatttgtgaaactgaagacagt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatttctggactttcaataaaccctagcatccctcaggaatttgtgaaactgaagacagt 260
Query: 61 gcccatctgcgaaaggagtcatttctctcagctctggcagaagggagagatggctacctg 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccatctgtgaaaggagtcatttctctcagctctggcagaagggagagatggctacctg 320
Query: 121 tggttgcatatcgaagcccatgctggcctcgagcctccctcagtattacaagcaccggtt 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 321 tggttgcatatcgaagcccatgctggcctccagcctccctcagtattacaagcactggtt 380
Query: 181 atacatctccaattccatgtgagcatcctagctctcctcagcagcctcacttccctcctc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 atacatctccaattccatgtgagcatcctagctctcctcagcagcctcactttcctcctt 440
Query: 241 tttataactcaaggtttccccaatgcccactgttc----tctcact-------------- 282
||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 441 tttataactcaaggtttccccaatgcccactgttcgttttctctctctcctctcctctcc 500
Query: 282 ------------------------------------------------------------ 282
Sbjct: 501 tctcctctcccctcccctcccctcccctcccctcccctcccctcccctctcctcctcctc 560
Query: 283 ----------------------------------------------------tctctctc 290
||||||||
Sbjct: 561 ctcctcctcctcctcctcctcctcctcctcctcctcctcctcttcttcttcttctctctc 620
Query: 291 -----ctttctctctctctct-tct-------------------------------tcct 313
|||||||||||||||| ||| ||||
Sbjct: 621 tctctctttctctctctctctctctctctctctctctctctctctctctctctctctcct 680
Query: 314 ----ctctttcagtatgctctattctgtcccttgcctttctgtctcactctgtttgtctc 369
||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||
Sbjct: 681 tactctctttcagtatgctctatcctgttccttgcctttctgtctcactctatttgtctc 740
Query: 370 tgtctcttgatatctacttactctgtgtgtgtgtgt------------------------ 405
||| |||||||||||||||||||| | | | | | |
Sbjct: 741 tgtatcttgatatctacttactctctctctctctctctctctctctctctctctctctct 800
Query: 406 ----------gtgtgtgtgtatactatattctatctcttgctatctctctccctccctca 455
|||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct: 801 ctctctctctgtgtgtgtgtatgctatattctatctcttgttatctc----cctccctc- 855
Query: 456 tcccccttcctctgtctgtc----gtgtctgtctgtctcttgctttctcactatactctc 511
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 856 tcccccttcctctgtctgtctgtcgtgtctgtctgtctcttgctttctcactatactctc 915
Query: 512 tatgttctcccactctccacgtccaaactgctagccatgtccagtctcctcctttctttc 571
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tatgttctcccactctccacatccaaactgctagccatgtccagtctcctcctttctttc 975
Query: 572 tctgctctggatat 585
||||| ||||||||
Sbjct: 976 tctgccctggatat 989
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_f16.g1 MSMg01no141_f16.g1 CHROMAT_FILE:
MSMg01no141_f16.g1 PHD_FILE: MSMg01no141_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:39 2005
(442 letters)
>mm_chr1_40959357_40960198
Length = 842
Score = 658 bits (340), Expect = 0.0
Identities = 373/384 (97%)
Strand = Plus / Minus
Query: 2 taacagctcagatatgaagtgtgtcccccccagtctcctatgtggcccgctaacttccca 61
||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 416 taacagctcagatatgaagtgtgtcccccaaagtctcctatgtggcacactaacttccca 357
Query: 62 gtgcagcagtgttcatagctggggcattgaaaagggattggaatgagagctctaactcat 121
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtgcagcagtgttcatagctgggacattgaaaagggattggaatgagagctctaactcat 297
Query: 122 caatagatgaatgtgttgatatagtcaccccattgtcaggaaatcacagcattggaagca 181
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 caatagatgaatgcgttgatatagtcaccccattgtcaggaaatcacagcattggaagca 237
Query: 182 tctaccacacaaacctgagaggaaacttcctaatgggggctgcagaaatgactctgcagg 241
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tctaccacacaaacctgcgaggaaacttcctaatgggggctgcagaaatgactctgcagg 177
Query: 242 taaatgcttgcagagggccctgagttagttcctagcactcagagcttatagccacctgta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 taaatgcttgcagagggccctgagttagttcctagcactcagagcttatagccacctgta 117
Query: 302 actctgcttccaggagaactgattacctcttctggcctcctcagggatatgcttagatgt 361
|||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct: 116 actctgcttccaggagaactgaggacctcttctggcctcctcagggatgtgcatagatgt 57
Query: 362 ggtgtagttaaacttacgcaagca 385
||||||||||||||||||||||||
Sbjct: 56 ggtgtagttaaacttacgcaagca 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
