BAC Information

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BAC

Clone NameMSMg01-141G09
Chromosome1 (Build37)
Map Location 50,575,135 - 50,575,711
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141G09.T7 (MSMg01no141_g09.b1)MSMg01-141G09.TJ (MSMg01no141_g09.g1)
ACCAG346281AG346282
length1,1201,264
length of high quality
(start - end)
208 (444 - 651)578 (103 - 680)
definitionCHROMAT_FILE: MSMg01no141_g09.b1 PHD_FILE: MSMg01no141_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:45 2005CHROMAT_FILE: MSMg01no141_g09.g1 PHD_FILE: MSMg01no141_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGTTTCTTTTNNNTGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTTTGTTTAGCTCTGAACCCTTTATTTTTATGGGGTTATT
TGATTTTCTAGAATCCACCCTCTTGAGTTCTTTATATACGTTGGATATTA
GTCCTCTATCTGATTTTGTATAGGTAAAGATAATTTTTCAATCTGTTGGT
GGCCTTTTTGTCTTATTGACTGTGTCTTTTACCTTACAGAAGCTTTGCAG
TTTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTATTCAGTAATTTTTCCCCTGTGCCAGTATCTTCGAGGATTTTC
CCCACTTTGTCCTCTATAAGTTTCAGTGTCTCTGGATTATGTGGAGCTCC
TTGTTCCACTGAGATTTGACCATAGTACAAGCAGATAGGAATGGATTAAT
TCACATTCTTCTACATGATACCTATCAGTTGTGCCACCACCATTTGTTGA
AACTGCTGTCTTTCTTCCACTGGGTGATTTTAGCTCCCTTGTCAAAGATC
AAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCATGAATTCTATTCCA
TTGGTTGACTTGTCTGTCACTATACTAGTACCATGCCATTTTATCACAAT
TGCTCTGTATTAAAGTTTTAAGTCAGGTATGGTGTATCCACCATAGGTTT
CTTTTATCCTCGAGAATAAGTTTTGCTATCCTATGTTTTTTGTTATTCCG
TATGATTTTGCTTATTGTTTTTTTTAATCTCTTACCATTTTATTTGCATT
TTTGATTTTAACTTCTTCTATTCTTTTTACTCTCTTTTTCTTTATTCTTT
CTTTTTTTTCCCCCTTTTCCATCGCCACTCTTTTTATTTTTGTATTTTCT
TCTTTCTCTTCTTGGTTCTTTTTTTATTCTTTCTTTATCCCTTTATTTTT
TCTTCTTTCTTTTTATTTTTATTATTTTCTCTTTCTTCCTCTTTTCACTT
CTTTCTCTTTTTTCTTTCTCATTCTTCTTTCTTTTTCCTATTACATCCTC
TATCTTTTTTTCTTCTTTTTCATTCTTTTCCTTTTTTTTATTTCTCTTCT
TTCTCTTTCTTTCTTTTAAG
NCCATCTTTTTTTTTAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTATAGATGCTTAGATATGTG
TGGAATATTCTGATGTGCCATTGAACACAAGGATGGGACCAGGTGATAAC
ATATTATTTATTTCAAAAATTAGAAGATTTTAAATATTTTCACTTTAAAG
TGATAAAAAATTACATTGCTTAAAATTGTTAAATAGTATATAGTACATTG
AGACACCATAATATAATACATGTAGGTACAATTATTTGCTTTCATCAGTT
AAATATATTGAAATTTAAAATGGTAAAAATAATAAATTCATTTAAGCAAT
TTATTTTACAAAAGTGTTTCTTTTTAAAGTCAATAACTAGCCATATTTTA
TAATTATAATATGATATCTTAAATCAATGCACTCTCCTACGGTTTGGTAT
GCTTTGGGGTGTATGAAGAGTGATGTCTAGCAATGAAACACCTCGATATG
TATTATTCTTGCTGGCGCTAAGGTCAATATTTCTCCACTCCCAAGAAGGC
CTGGTGGAGCATGCATTCCCTTCTATTGACTACAGGTATTCTTGTCAGCA
TCTAAACAAGACCAGCACAGAGAAAATGAGATTTATCATTTTCGAGGCCA
AAGTTAAAATGTAGTGTAGCTTTTGCCAAGTTCCTTGTCCTGCTCCTACT
ATAGCCAGCAATGTTGGAAATCCTCTGTTAGTCTTGAGATCACTACAGTA
CATGCATCTGTGGTTGGTCTGTGAAGGTCCCAGCTTGATTTTCAGTTATA
CTAAGCTGCCAGCCTCTTTGAGATACATCTGAAAAAACAGCCCTATTCCA
ACTAATGTTTAGTGCTCCCTCAGATTACAATTTTCTTTATTCACATTCTG
AATTATGCTACATATTATTTTTTTTCTTTTTCCTTCTGTTTTATTATCTT
TTGATGGTTTTTTTCTACTTATTGAGCATAATTTTCTTCTTTAACCTTTT
ATTTCCTTTTTTATCTTTTCCCCTTCTTTTCCCTCATTATCTATTTTTAT
TTCCTCTTTAAATCATTTCCTTCTTCTCTTCTCTTCTGAGCTCTATTACC
TTTCTTTTCTTTCTTTCTTAACACTTCTTCTTTCTTTTTACATACCTCTT
TCTTTCTTTTCTACGACACCTTTCATACTCCTTTTATTTCCATTATCTTT
CTTCTTTTATTCTATCTTCATACTCTCTATCTTTCTACTACTTACATTTN
CTTCCTATTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_g09.g1 MSMg01no141_g09.g1 CHROMAT_FILE:
MSMg01no141_g09.g1 PHD_FILE: MSMg01no141_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:45 2005
         (578 letters)



>mm_chr1_50574933_50575911
          Length = 979

 Score = 1046 bits (541), Expect = 0.0
 Identities = 568/577 (98%), Gaps = 1/577 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   atattctgatgtgccattgaacacaaggatgggaccaggtgataacatattatttatttc 62
           |||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 779 atattctgatgtgctattgaacacaaggatgggtttaggtgataacatattatttatttc 720

                                                                       
Query: 63  aaaaattagaagattttaaatattttcactttaaagtgat-aaaaaattacattgcttaa 121
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 719 aaaaattagaagattttaaatattttcactttaaagtgataaaaaaattacattgcttaa 660

                                                                       
Query: 122 aattgttaaatagtatatagtacattgagacaccataatataatacatgtaggtacaatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aattgttaaatagtatatagtacattgagacaccataatataatacatgtaggtacaatt 600

                                                                       
Query: 182 atttgctttcatcagttaaatatattgaaatttaaaatggtaaaaataataaattcattt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 atttgctttcatcagttaaatatattgaaatttaaaatggtaaaaataataaattcattt 540

                                                                       
Query: 242 aagcaatttattttacaaaagtgtttctttttaaagtcaataactagccatattttataa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aagcaatttattttacaaaagtgtttctttttaaagtcaataactagccatattttataa 480

                                                                       
Query: 302 ttataatatgatatcttaaatcaatgcactctcctacggtttggtatgctttggggtgta 361
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttataatatgaaatcttaaatcaatgcactctcctacggtttggtatgctttggggtgta 420

                                                                       
Query: 362 tgaagagtgatgtctagcaatgaaacacctcgatatgtattattcttgctggcgctaagg 421
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 419 tgaagagtgatgtctagtaatgaaacacctcgatatgtattattcttgctggtgctaagg 360

                                                                       
Query: 422 tcaatatttctccactcccaagaaggcctggtggagcatgcattcccttctattgactac 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcaatatttctccactcccaagaaggcctggtggagcatgcattcccttctattgactac 300

                                                                       
Query: 482 aggtattcttgtcagcatctaaacaagaccagcacagagaaaatgagatttatcattttc 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aggtattcttgtcagcatctaaacaagaccagcacagagaaaatgagatttatcattttc 240

                                                
Query: 542 gaggccaaagttaaaatgtagtgtagcttttgccaag 578
           ||||||||||||||||||||||| |||||||||||||
Sbjct: 239 gaggccaaagttaaaatgtagtggagcttttgccaag 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space:   550392
Effective search space used:   550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)