BAC Information

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BAC

Clone NameMSMg01-141G11
Chromosome1 (Build37)
Map Location 18,731,074 - 18,731,784
singlet/doubletsinglet
Overlap genenone
Upstream geneCrispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
Downstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141G11.T7 (MSMg01no141_g11.b1)MSMg01-141G11.TJ (MSMg01no141_g11.g1)
ACCAG346285AG346286
length1,1411,260
length of high quality
(start - end)		709 (91 - 799)689 (88 - 776)
definitionCHROMAT_FILE: MSMg01no141_g11.b1 PHD_FILE: MSMg01no141_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:45 2005CHROMAT_FILE: MSMg01no141_g11.g1 PHD_FILE: MSMg01no141_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAATTCTTTTNNNNCCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTAGATCAGTGACTTGCCCTTAAAGACCAGAGAAGCT
TCCTCCAGCAGCAGATGGGACCTTAAATAGCAACCAACACCCAGATATCA
TGCAGAGAATAGAATTATGAGTCCTTGGAAAACACAACCCTAAACTGGGT
GTATCCATTAAATCTCTCCCCTCAGGACTCATGGAACCCTACACAAGAGG
ACACAGAAATAGTGTAAGAGCCACAGGGAATAGAATGTACCAAGTAATAA
GACCCTCTAAATTAACAGGATGGGTGTACATACAAACTCACAGATACTGT
GGCAGCATGTACAGGGCCGGCACTGTTTATACTGGGTGAAGGTCCTGGAA
GCTGAAGAATTGAATGCATGCCCGTAACCCAAAAGATAACTCCTGTTCAT
AACCACATACAAATAAAAAAACTAGTTTTTTTCCAAAGAAGTCTCATTAG
GAAAACAAACTCCTATTAAGAGTACACTGCATGTCCAGTACTAGATGACC
AACAGAAAATGAACTCAATAGCATCATTTGAATTTCTTTGTTTCATAACG
TGTCCGGGCTTTCATTTTTTCCTTATTTTTATTTTATTTATACATTTTTC
TCGTTTTACCTTACAGACCCCCTTGCATATATAAAGATGAGAAAACCAAA
ACCAGGATATAGCATGTGAGAAAAGGAAATCCATTTTCATTTTTTAAAAA
ATATGCTTTTAATTAGCTATATTTAAGATCTTTTTACATTTATTGCTATT
GAAAGGCAAAAATGTAAAAGTGCTAATTTTGTGGTTATTTTCAGAATGCA
ATGAACGATTTGATTACTTCTTCTTCATTACTTAAGTTGATTATTTGGTG
TGTCCTAAATACTTGTAATCCTTTAACTCTGGTTTTCAACATAATAATGT
ATTTCCATAGTTCTCTTTGTGATAATGCCCTGCTTCTTTTTTTTATTTTT
TACTTCCCCTATACAGCCTTATTTGCTTTTATTTTCTTCTTACGTGCCTT
TCTCACATTCCCTCTTTTTTTTTTAGTCCTTCTTTTATCTCTTATTTTTC
TTATAAGTTTTTCTCCTTATACTTCCTTTCTTCCTTTTCAT

NCCCCTTCTTTTTTTTAAGATGTGANCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTAGAACAATGAGAAGACCA
AACCTATGGATAATAGGACCATATGAGAATGAAGATCCCCAACTTAAAGG
GCCAGCAAATATCTCAACAAAATTATAGAAGAAAACTTCCCTAACCTAAT
AAGAGATGCCCATAAACATACAAGAAGACTACAGTACTCCAAATAGACTG
GACAAGAAAAGAAATTCCTCCCAACAGATAATAATCAGAACATCAAATGC
AATAAATAAGGATAGAATATTAAAAGCAGTAAAGGAAAAAGGTCAAATAA
CATATAAAGGCAGACCTATCAGAATTACACCAGACTTCTCAAAAGAGACT
ATGAAAGCAAGAAGGTTCTGGACAGATATTATATAGACCATAAAAGAACA
CAAATGCCAGTCTAGGCTACTATATGCAGCAAAACTCTCAATTACCATAG
ATGGAGAAACCAAAGTATTCCATGACAAAACCAAATTCACGCAATATCTT
TCCATGAATCCAGCCCTTCAAAGTATAATAAAGGGAAACTCCAACACAAG
GAGGGAAATGACACCCTAGAAAAAAGCAAGAAAGTAATCCTTCAACAAAC
CTGAAAGAAGCCAGTCAGAACACCAACACTAACAACAAAAATAATAGGAA
GTAACAATTACTTTTTCTTAATATCTCTTAATATCAATGAAGTCAATTCC
AAAATAAAAAGACATAAACTGTCAGACTGGCCAAAGAAACAGGACTCATC
ATTTTGCTGCAAGTAGGAAACCTACTTTAGGGACAAAGACAGACATTATC
TCAGAAGTAAAGGGTGGAAAACTATTTTTCAAGCAATAGTCCTAAGAAAT
AGCTGCAATAGCCATTCTAAAATTCATTTAAACCCCCGATTTTCCTCTTA
ATCTTATCTATTTTATTCCTATCAAACTTATCTAACGAAAATCAGGCGGG
GGCCTTCATATCTTTCCAAGGTTCATCTTTCAAAAGAAATTTCCAATTTT
GAATGTCTATGCTCCAAAGCCTGGGTTTTTGACTTTTCTAAAACAATTTT
TTAAAAGTTTTAATACCTCTTTGTCCCCCCCCTTTTTATGTGGAGATCTT
TTTAATCTCTCTCCTACCATGGTTATATTTGTGTAATCAAACTATTTCGA
TTCCTTGTCTCTCTCTTATATTTTCTCTTTATTGTTCCTTAATATTCTAT
TACTACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_g11.b1 MSMg01no141_g11.b1 CHROMAT_FILE:
MSMg01no141_g11.b1 PHD_FILE: MSMg01no141_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:45 2005
         (709 letters)



>mm_chr1_18730875_18731984
          Length = 1110

 Score = 1311 bits (678), Expect = 0.0
 Identities = 703/712 (98%), Gaps = 4/712 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaagcttcctccagcagcagatgggaccttaaatagcaaccaacacccagatatca 60
           |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||
Sbjct: 200 cagagaagcttcctccagcagcagatgggaacaaaaatagcaaccaacacccagatatca 259

                                                                       
Query: 61  tgcagagaatagaattatgagtccttggaaaacacaaccctaaactgggtgtatccatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgcagagaatagaattatgagtccttggaaaacacaaccctaaactgggtgtatccatta 319

                                                                       
Query: 121 aatctctcccctcaggactcatggaaccctacacaagaggacacagaaatagtgtaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatctctcccctcaggactcatggaaccctacacaagaggacacagaaatagtgtaagag 379

                                                                       
Query: 181 ccacagggaatagaatgtaccaagtaataagaccctctaaattaacaggatgggtgtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccacagggaatagaatgtaccaagtaataagaccctctaaattaacaggatgggtgtaca 439

                                                                       
Query: 241 tacaaactcacagatactgtggcagcatgtacagggccggcactgtttatactgggtgaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacaa-ctcacagatactgtggcagcatgtacagggccggcactgtttatactgggtgaa 498

                                                                       
Query: 301 ggtcctggaagctgaagaattgaatgcatgcccgtaacccaaaagataactcctgttcat 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggtcctggaagctgaagaagtgaatgcatgcccgtaacccaaaagataactcctgttcat 558

                                                                       
Query: 361 aaccacatacaaataaaaaaa--ctagtttttttccaaagaagtctcattaggaaaacaa 418
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaccacatacaaataaaaaaaaactagtttttttccaaagaagtctcattaggaaaacaa 618

                                                                       
Query: 419 actcctattaagagtacactgcatgtccagtactagatgaccaacagaaaatgaactcaa 478
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actcctcttaagagtacactgcatgtccagtactagatgaccaacagaaaatgaactcaa 678

                                                                       
Query: 479 tagcatcatttgaatttctttgtttcataacgtgtccgggctttcattttttccttattt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tagcatcatttgaatttctttgtttcataacgtgtccgggctttcattttttccttattt 738

                                                                       
Query: 539 ttattttatttatacatttttctcgttttaccttacagacccccttgcatatataaagat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttattttatttatacatttttctcgttttaccttacagacccccttgcatatataaagat 798

                                                                       
Query: 599 gagaaaaccaaaaccaggatatagcatgtgagaaaaggaaatccattttcatttttt-aa 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 799 gagaaaaccaaaaccaggatatagcatgtgagaaaaggaaatccattttcatttttttaa 858

                                                               
Query: 658 aaaatatgcttttaattagctatatttaagatctttttacatttattgctat 709
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 aaaatatgcttttaattagctatatttaagatctttttacatttattgctat 910


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1110
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1100
Effective search space:   768900
Effective search space used:   768900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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