BAC Information

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BAC

Clone NameMSMg01-141J02
Chromosome1 (Build37)
Map Location 12,198,096 - 12,198,831
singlet/doubletsinglet
Overlap genenone
Upstream geneC030045D06Rik, A830018L16Rik, LOC665262
Downstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141J02.T7 (MSMg01no141_j02.b1)MSMg01-141J02.TJ (MSMg01no141_j02.g1)
ACCAG346406AG346407
length1,1871,176
length of high quality
(start - end)		736 (94 - 829)685 (90 - 774)
definitionCHROMAT_FILE: MSMg01no141_j02.b1 PHD_FILE: MSMg01no141_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:07 2005CHROMAT_FILE: MSMg01no141_j02.g1 PHD_FILE: MSMg01no141_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCATTATNNNNNNNATACACTGGGCGCTATAXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGACTAGCCATGCAGCACGTTTAAGTGAAAATAAT
TGAAGAATTTGTAGAGGATAGCTGCCAGAAAGATTTTCCCACAACGAGTT
TTAAATTTAATGTGGCCTCAAAAATATTGTAATTAAAATTAATAATCAAA
TAGAATATTCCAGAAACTATTTGTTCATATTGGTTCAAAGATCTGGAAAT
CTTAATGAAGAAAAGTTTCCTCAAAAGAATTTAGTTATCTCTGCTATATG
AAAAAGTACATATCATATATAAAAATTATTTATACTTACATATAATATGT
AAATATATTATTACTTATATGTAAATTAGTTTATTAATGTAGTATAAATG
ACATATCAATTATATATACTATATAATTACATAGTATGTATAACATATAA
TAAAAATTTTAATTGTATATATTTATATGTAACATGTAAATATATATAAT
TATCAGAAGATAAGATTAGATATTGTAATAGCAAGTCTGAGATGACTTAT
ACATGGAAAAGGTAAAGTAGTTACATACTTTTCTCTCTATTTCATCAGTT
AAGTTGATATAACAATTCTTATATGCCTGTTTATTCCTGCTCTACTAAAA
ACAAAACAAACAAACAATAGAAAAGAATAGACTTTTAACTATGGCAGAAA
GACAGTCCGCACAGACAGATTGGTCTCAGTGAAACACATATTAGTGATAG
TCCTGGGTTTTCTCTTGCCATATAAGTTCGAACTAAAAGGCCAGTAACCT
AGGAACAGCAGGTGCATAAAACATCCCAATAAAGTTTTGCAGCCTTGGCA
AAGAATCAGGAAAGGGCTAAGCAATTAAGACAGGAAATGTAGACAAATTC
TGTTCCTACTCCAGGGCCCTTTTCCACCTATGCTAGCAAGGCCGCAAAAA
GAAGTCTAGACTTCAATCCTCCTAAAAGTTTTGAAGTGATGTCCCCAAAG
GCCCCATAAGGGGGGATGTCCGTGGAATACCAATTAAAAAAAACCAGAAC
TTTTCATTTCCTCCAGAAGGAAAAATTTCCTTCCTGTGCGCCAAAAACCG
AAACCCCTTTCCGAAAGGCCCAAAAAGGGCCCTTGCCAACTTTAAAGAAA
AAAAAGGCCCCCCCTTCCCTTTTTCTCCCATAAAAAA

NNCATGTCTTNNNNNAAGATGCGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTGATCCATTTAGACTTGA
GCTTTGTACAAGGAGATAACAATGGATCAGTCTGCATTCTTCTACATGAT
GAATGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTCTTCCTCC
TATAGGGTTGCAGACACCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTT
CATTAGGGGCCCTGTGTTCCATCCAATAGATGACTGGGAGCATCCACTTC
TGTATTTGCCAGGCATCGGCATAGACTCACAAATATCTAATAAAAAAAAA
AAAGAAAAGAAAAGAAAAGAAAATGCTGTCTTTTTTCCACTGGATGGTTT
TATCTCCCTTGTCAAAGATCAAGTGACCTTAGGTGTGTGGGCTCATTTCT
GGGTCTTCAATTATATTCCATTGATCTACCTGTCTGTCACTGTACCAGTA
CTATGCAATTTTTAATCACAATTGCTCACTAGTACAGTTCGAGGTCAAGC
ATAGTGATTCCACCAGAGATTCTTTTATTATTGAGAATAGTTTTTGCTAC
TGGAAGATCCAGCAATAACTCCCCTGGGCATATGTCCAGAAGATGTTCCA
ACTTGTAATAAGAACACATGCTCCACTATGTTCTTAGAAGCCTTATTTAT
AATAATGAGTAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGG
TACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCAATTAAA
AACAATGAATTTATGAAATTCTTAGGCAAATGAATGGATCTGGAGGAGAT
CATCCTGAGTGAGGAACCCCAGTCCCAAAAGAACACACCTGAAATGCACT
CCCTGATAAGTGGATATTACCCCAGAAACTTTTGATACCCAAGAAACATT
TTGCAAAACCCTTGAAACTCAAAAAAAAGGAAAACCGAAGTGGGGAATCT
TCCTCCTTAAAATGGGGAACCAAAAACCCATGGAAAGGATTTACGAAAAC
AAAGTTCCAAACTTTAAAAAAAAAGGAAGGATTTTTCCCAAAAAGGCCCC
GTCCCCGGGAATCTCTTCTCAATTAACGCCCCCCCAAAAACTCAAAACCC
TTTGTGAAAACCCAAAAAAAATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_j02.b1 MSMg01no141_j02.b1 CHROMAT_FILE:
MSMg01no141_j02.b1 PHD_FILE: MSMg01no141_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:07 2005
         (736 letters)



>mm_chr1_12197896_12199031
          Length = 1136

 Score = 1183 bits (612), Expect = 0.0
 Identities = 706/748 (94%), Gaps = 24/748 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataattgaagaatttgtagaggatagctgccagaaagattttcccaca-acgagtttt 59
           ||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct: 201 aaataattgaagaatttgtagaggatagctgtcagaaagattttcccacaga-gagtttt 259

                                                                       
Query: 60  aaatttaatgtggcctcaaaaatattgtaattaaaattaataatcaaatagaatattcca 119
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 260 aaatttaatgtggcctcaaaaatattgtaagtaaaattaataatcaaatagaatattcca 319

                                                                       
Query: 120 gaaactatttgttcatattggttcaaagatctggaaatcttaatgaagaaaagtttcctc 179
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 320 gaaactatttgttcatattggttcaaagatctggaaatcttaatgtagaaaagtttcctc 379

                                                                       
Query: 180 aaaagaatttagttatctctgctatatgaaaaagtacatatcatatataaaaattattta 239
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 aaaagaatttagttatctctgctatatgaaaaagttcatatcatatataaaaattattta 439

                                                                       
Query: 240 tacttacatataatatgtaaatatattattacttatatgtaaattagtttattaatgtag 299
           |||||||||       |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 tacttacat-------gtaaatatattattacttatatgtaaattagtttattaatatag 492

                                                                       
Query: 300 tataaatgacatatcaattatatatactatataattacatagtatgtataacatata--a 357
           ||||||||| |||| ||||||| ||| ||||||||||||||||||||||| ||||||  |
Sbjct: 493 tataaatgatatattaattatacatattatataattacatagtatgtataccatatataa 552

                                                                       
Query: 358 taaaaattttaattgtatatatttatatgtaacatgtaaatatatataattatcagaaga 417
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 553 taaaaattttaattgtatatatttatatgtaatatataaatatatataattatcagaaga 612

                                                                       
Query: 418 taagattagatattgtaatagcaagtctgagatgacttatacatggaaaaggtaaagtag 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 taagattagatattgtaatagcaagtctgagatgacttatacatggaaaaggtaaagtag 672

                                                                       
Query: 478 ttacatacttttctctctatttcatcagttaagttgatataacaattcttatatgcctgt 537
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 673 ttacatacttttctctctatttcatcagttaagttgatataacaattcttgtatgcctgt 732

                                                                       
Query: 538 ttattcctgctctactaaaaacaaaacaaacaaacaatagaaaagaatagacttttaact 597
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||
Sbjct: 733 ttattcctgctctactaaaaataaaacaaacaaacaatagtaaagaatagactataaact 792

                                                                       
Query: 598 atggcagaaagacagtccgcacagaca-gattggtctcagtgaaacacatattagtgata 656
           |||||||   |||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct: 793 atggcag---gacagtccacacagacacg-ttggtctcagtgaaacacatattagtgata 848

                                                                       
Query: 657 gtcctgggttttctcttgccatataagttc--------gaactaaaaggccagtaaccta 708
           ||||||||||||||||||||||||||||||        ||||||||||||||||||||||
Sbjct: 849 gtcctgggttttctcttgccatataagttccagacttcgaactaaaaggccagtaaccta 908

                                       
Query: 709 ggaacagcaggtgcataaaacatcccaa 736
           ||||||||||||||||||||||||||||
Sbjct: 909 ggaacagcaggtgcataaaacatcccaa 936


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1136
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1126
Effective search space:   817476
Effective search space used:   817476
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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