BAC Information

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BAC

Clone NameMSMg01-141N09
Chromosome1 (Build37)
Map Location 147,836,317 - 147,836,988
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141N09.T7 (MSMg01no141_n09.b1)MSMg01-141N09.TJ (MSMg01no141_n09.g1)
ACCAG346606AG346607
length1,2581,234
length of high quality
(start - end)		748 (94 - 841)672 (92 - 763)
definitionCHROMAT_FILE: MSMg01no141_n09.b1 PHD_FILE: MSMg01no141_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:42 2005CHROMAT_FILE: MSMg01no141_n09.g1 PHD_FILE: MSMg01no141_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTATCCTTTNNNTTACAGTGGGCGCTNXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGAGGAATACCCCCATTAAGAGAAGCACTTGA
AAAAATTTTCAACATCCTTAACCCTCAGGGAAATGCAAATCCCAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGTTGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT
TCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCC
CCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAA
ACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAT
TTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCT
GAGATGAAAGGATGGACCATGTAAAGACTGCCATATCCAGGGATCCACCC
CATAATCAGCATCCAAATGCTGACACCATTGCATACACTAACAAGATTTT
ATTGAAAGGACCCAGATGTAGCTGTCTCTTGGGAGACTATGCCCGGGGCC
TAGCAAACACAGAAATTTGAAGCTCCCGGCCAGCTAATGGATGGACCTTA
GGGCTCCCAATTGGAGGAGCTATAAAAAAGTAACCCAGGGAGTTTAAGGG
GATCCTGCACCCCATAAGGGGGGAACAACCTTTATGAAACTTACCCGTTC
CCCCGGAAATTTTGGAACTCTAGCTGCATAGGTTATCAAAAAAAGGGGCT
AAAATCCGCCTTTCTTGTGAAATAAAGACCCTTTTTGTTTACATCAATTC
TTTTTTGTTTCCCCTACCATTGTGGATATACTCCGGCTCTTTAAATGGTG
ATGGTGTT

CCATTTCTTTTNNTTAACATGGGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTATAAATGGTTTTCATAG
CAGAGCTAGACTCTTGTGGAACCTAAGTAATAATACAACCATACCAACCC
AAACATTTGAAAATACTAGCTTCAATGTATTACCCCAATCTATTGTTCAA
TACTTAGCCTAGCTCAGCTAATAGGTCAGTTTATGTTGACGAGGCTAGAA
TCACAAATTTCTGGGTAGGGTTATGTATACAGAGTGACTGAAATGTAACT
ATGAGCAGTTTTTCTAGCAATCCTCATGACACAGTTCAGATTCTTCATAC
AATAATGTTGATGACAGTGCTTTGCTTGAAATAAATTAAAACAGGCTGAG
TATAATGGTGCATTCCTATGGGTCTAAGACTCAAGAGATATAAATATGAC
AGTTACAGGTTCAAGATCTTCTGTCAATACATGAGACCCTGAATCAGTAA
AACTAAAAGAAAACGAACAAGAGCAGAAACAATAAGAAGAGATCTTAAAT
GTGAACAAATAATCAGGGGTTATAGAGAGGAATTACATTAGTAAATGTAT
ATATATGTTAATATATTAAATATATATGATATAAAATAAACCAATAAAAT
ATATTAATACAAAATATCTTATACTTAGTATTTTTCTTAGATTTTTCTGG
TTTATGGAATATTTCTTAGATTTATTAATTTATTCAAGTGTTACTTCATT
AGTCATACAATGGTTGTCTTTAGGCTTAAAATTTAGTGAAACAGGACATT
ATTAAGTTCTTTAACCAGTTCAAAACAGCAATAAGCCTCCTAACAAGATA
GAACCAAGATAAGGTCTCTGTCCCTTGTAGAATTCCTAAAAATCCCACTG
AAAGTTGTTGATTCTGTCCGTTTTGATACCTGAAAAATGGGAGAATGATT
TCTATAGTGAAAGGAATAGCTAAAATATAGAGACTTTACTAAAATGCCTA
TTTTTTTGTCAATCCAAAAAATCCCCCCATTGAATAATAAAAACCCAATT
TTTAGGAAACCCTTCCCTTGTAAGCCANAACTGAAAATTCTAATCTTTTC
CCAAAAATAACCCCCCAAAGGATCCCCCCCAAAAAAATTTTTCCCCTTTT
TTTCAAAAATTTCTCGACCATATACAAAAAACGGGCGAAAAAAAAATAAA
AAAAAGACTTGTGTATTCTGTTTTATACAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_n09.g1 MSMg01no141_n09.g1 CHROMAT_FILE:
MSMg01no141_n09.g1 PHD_FILE: MSMg01no141_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:42 2005
         (672 letters)



>mm_chr1_147836117_147837188
          Length = 1072

 Score = 1237 bits (640), Expect = 0.0
 Identities = 664/672 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcatagcagagctagactcttgtggaacctaagtaataatacaaccataccaaccca 60
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||||
Sbjct: 201 ttttcatagcagagctagactcttgtggaaaataagtaataatacaaccataagaaccca 260

                                                                       
Query: 61  aacatttgaaaatactagcttcaatgtattaccccaatctattgttcaatacttagccta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatttgaaaatactggcttcaatgtattaccccaatctattgttcaatacttagccta 320

                                                                       
Query: 121 gctcagctaataggtcagtttatgttgacgaggctagaatcacaaatttctgggtagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcagctaataggtcagtttatgttgacgaggctagaatcacaaatttctgggtagggt 380

                                                                       
Query: 181 tatgtatacagagtgactgaaatgtaactatgagcagtttttctagcaatcctcatgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtatacagagtgactgaaatgtaactatgagcagtttttctagcaatcctcatgaca 440

                                                                       
Query: 241 cagttcagattcttcatacaataatgttgatgacagtgctttgcttgaaataaattaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttcagattcttcatacaataatgttgatgacagtgctttgcttgaaataaattaaaa 500

                                                                       
Query: 301 caggctgagtataatggtgcattcctatgggtctaagactcaagagatataaatatgaca 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggctaagtataatggtgcattcctatgggtctaagactcaagagatataaatatgaca 560

                                                                       
Query: 361 gttacaggttcaagatcttctgtcaatacatgagaccctgaatcagtaaaactaaaagaa 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gttacaggttcaagatcttctgtcaatacatgagactctgaatcagtaaaactaaaagaa 620

                                                                       
Query: 421 aacgaacaagagcagaaacaataagaagagatcttaaatgtgaacaaataatcaggggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacgaacaagagcagaaacaataagaagagatcttaaatgtgaacaaataatcaggggtt 680

                                                                       
Query: 481 atagagaggaattacattagtaaatgtatatatatgttaatatattaaatatatatgata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atagagaggaattacattagtaaatgtatatatatgttaatatattaaatatatatgata 740

                                                                       
Query: 541 taaaataaaccaataaaatatattaatacaaaatatcttatacttagtatttttcttaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaataaaccaataaaatatattaatacaaaatatcttatacttagtatttttcttaga 800

                                                                       
Query: 601 tttttctggtttatggaatatttcttagatttattaatttattcaagtgttacttcatta 660
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttttctgctttatggaatatttcttagatttattaatttattcaagtgttacttcatta 860

                       
Query: 661 gtcatacaatgg 672
           ||||||||||||
Sbjct: 861 gtcatacaatgg 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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