Query= MSMg01no142_c01.b1 MSMg01no142_c01.b1 CHROMAT_FILE:
MSMg01no142_c01.b1 PHD_FILE: MSMg01no142_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:23 2005
(691 letters)
>mm_chr1_120539211_120540302
Length = 1092
Score = 1259 bits (651), Expect = 0.0
Identities = 682/693 (98%), Gaps = 3/693 (0%)
Strand = Plus / Plus
Query: 1 cacttgtgccttgagcttttcctcacctgtttgtaccacaaggtgtttcctattcttctg 60
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 201 cacttgtgccttgagcttttcctcacccggttgtaccacaaggtgtttcctattcttctg 260
Query: 61 ctgccctgaggcagtcctggcagcagccccttctaagtgcccaggccatggttttcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccctgaggcagtcctggcagcagccccttctaagtgcccaggccatggttttcttct 320
Query: 121 tcaggagtacccacagataactgtcttgcctattctgactagagtata--ccaggcttga 178
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tcaggagtacccacagataactgtcttgcctattctgactagagtatataccaggcttga 380
Query: 179 taacctcattcatgacattcatagcagaaaggaggttaaggtcttcttagacataggtca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacctcattcatgacattcatagcagaaaggaggttaaggtcttcttagacataggtca 440
Query: 239 tgaccttcagggaaaaggctcaggcccctggacagaaattttttgtccctgtagtgtgct 298
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tgaccttcagggaaaaggctcaggcccctggacagaaaggctttgtccctgtagtgtgct 500
Query: 299 gtctccctgactgagtgcactctgtcacagtcacgggtacttaaatagtaccatacacgt 358
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 gtctccctgactgagtgcactctgtcacagtcacgggtacttgaatagtaccatacacgt 560
Query: 359 tgaggtgacgagacaaattgcccgtgctgggcttcatggccactgcaccgtgctttcctc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggtgacgagacaaattgcccgtgctgggcttcatggccactgcaccgtgctttcctc 620
Query: 419 ctctgctattcttctagtgcttttggcacgttgccctcctttctcttggggtgaggatgg 478
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 ctctgctattcttctagtgcttttggcacgttgccctcctttctct-ggggtgaggatgg 679
Query: 479 cctcttattatattttacgtggcattcattacctaaaccagcaactgttggaaagtaaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cctcttattatattttacgtggcattcattacctaaaccagcaactgttggaaagtaaac 739
Query: 539 aacctgtaaatcttggctggccctggcaattgcctcctgttcttgggaacacagtgatct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacctgtaaatcttggctggccctggcaattgcctcctgttcttgggaacacagtgatct 799
Query: 599 gggcagaaggccgtgctctgggttctgcccactgggcagaactactctggtttgtctgcc 658
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 800 gggcagaaggccgtgctctgggttctgcccactgggcagaactactctggcttgtctgcc 859
Query: 659 cttcttgcaaaggcacctggtggcctctgccca 691
||||||||||||||||||||| |||||||||||
Sbjct: 860 cttcttgcaaaggcacctggttgcctctgccca 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1092
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1082
Effective search space: 736842
Effective search space used: 736842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_c01.g1 MSMg01no142_c01.g1 CHROMAT_FILE:
MSMg01no142_c01.g1 PHD_FILE: MSMg01no142_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:23 2005
(752 letters)
>mm_chr1_120652591_120653740
Length = 1150
Score = 1000 bits (517), Expect = 0.0
Identities = 584/617 (94%), Gaps = 21/617 (3%)
Strand = Plus / Minus
Query: 1 gaaatggaagtgagaccacacaagcacccagggcatctgtcacagtggagcagggcattc 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 603 gaaatgcaagtgagaccacacaagcacccagggcatctgtcacagtggagcagggcgttc 544
Query: 61 tgctctctctctatggggccaggtttttataactgggataataactggggctaggatgag 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tg--ctctctctatggggccaggtttttataactgggataataactggggctaggatgag 486
Query: 121 ggtagagagcacaggctagggtgccctccccccacttcagtagcagccagccagcttagc 180
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 485 ggtagggagcacaggctagggtgcccttcccccacttcagtagcagccagccagcttagc 426
Query: 181 ccctggatttgaggaaaccctggccagggtttgctctgggggagactacagctctgaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ccctggatttgaggaaaccctggccagggtttgctctgggggagactacagctctgaggg 366
Query: 241 aagtgatttgaaaatcaaatgggcttgctggaacatttttttcctgagcggagcagtttc 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 365 aagtgatttgaaaatcaaatgggcttgctggaacattccattcctgagcggagcagtttc 306
Query: 301 cagcacttaaatgagctgtgcgagcataatggtcttgggagccaggttatcgcggggcct 360
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 305 cagcacttaaatgagctgtgcgagcataatggccttgggagccaggttatctcggggcct 246
Query: 361 ttgcagggatctgcctaacattcccctggtaccctagggagatgacagggccagcaagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttgcagggatctgcctaacattcccctggtaccctagggagatgacagggccagcaagat 186
Query: 421 ggctcagaaggtaatggcattgttgccatgcctaagaacctcagtccaatttct-aggtc 479
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 185 ggctcagaaggtaatggcattgttgccatgcctaagaacctcagtccaatt-cttaggtc 127
Query: 480 ccagatggtagaaggagagggtcagttcccacaagttgtcctctgacctccacatgcaca 539
||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 126 ccaga-----------gagggtcagttcccacaagttgtcctctgacatccacatgcaca 78
Query: 540 ccaaggaaagactgagaccacacagcacacacac------tatcacatccaccatacata 593
|||| | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 77 ccaaagcaagactgagaccacacagcacacacacacacactatcacatccaccatacata 18
Query: 594 tatacacacaccatata 610
|||||||||||||||||
Sbjct: 17 tatacacacaccatata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 752
Length of database: 1150
Length adjustment: 10
Effective length of query: 742
Effective length of database: 1140
Effective search space: 845880
Effective search space used: 845880
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
