Query= MSMg01no142_e07.b1 MSMg01no142_e07.b1 CHROMAT_FILE:
MSMg01no142_e07.b1 PHD_FILE: MSMg01no142_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:43 2005
(707 letters)
>mm_chr1_178268366_178269471
Length = 1106
Score = 1212 bits (627), Expect = 0.0
Identities = 688/719 (95%), Gaps = 21/719 (2%)
Strand = Plus / Plus
Query: 1 tacctgagggcctgttttatcagaatgtaaccccatacacttccagggctatgtgctaca 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacctgagggt-tgttttatcagaatgtaaccccatacacttccagggctatgtgctaca 259
Query: 61 atcacacttatcaaaaaaaggagactaagaagatgttttaaaagttattggtaacatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atcacacttatcaaaaaaaggagactaagaagatgttttaaaagttattggtaacatttt 319
Query: 121 tactggattaaaaagaaacccacaaactgggagctggggagctggctcagtggccaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tactggattaaaaagaaacccacaaactgggagctggggagctggctcagtggccaaagt 379
Query: 181 gcttgttttgaaagtgtgaggacttgggtttgaacaccagaatctacattgtttttaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcttgttttgaaagtgtgaggacttgggtttgaacaccagaatctacattgtttttaaaa 439
Query: 241 tataggcatcatggcatgcttgcaatgtcttttggggaggtagagattagcagctttctg 300
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 440 tataggcatcatggcatgcttgcaatgtcttctggggaggtagagacaagcagctttctg 499
Query: 301 tccagtcaacctagcctactttgtgagttccaggctagtgagagactcagtataaaaata 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tccagtcgacctagcctactttgtgagttccaggctagtgagagactcagtataaaaata 559
Query: 361 aaataaaaaacaaaaacaaaaaataaacaatgtttaagaaaaacactttagattgtcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaataaaaaacaaaaacaaaaaataaacaatgtttaagaaaaacactttagattgtcctc 619
Query: 421 tgacctgcacatgtacacacaaacatacacatacaaacacacacacacattcatgcactc 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgacctacacatgtacacacaaacatacacatacaaacacacacacacattcatgcactc 679
Query: 481 acacacacatcacacattctgacacacccacaagtacacacatactcaagacatgtacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acacacacatcacacattctgacacacccacaagtacacacatactcaagacatgtacac 739
Query: 541 acatagtcacactcacaagcacacacacacacacagtcaaacataacacgcattcttgca 600
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 740 acatagtcacactcacaagcacacacaca------gtcaaacataacacacattcttgca 793
Query: 601 aacacacacacacacacaca----------aacagcatgtatcacaatctatctttatag 650
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 794 aacacacacacacacacacacacacacacaaacagcatgtatcacaatctatctttatag 853
Query: 651 cccaacttcttatttcttt--atctgagtagctcttagttcttatttatcagcctactg 707
|||| |||||||||| || | ||||||||||||||||||||||||||||| ||||||
Sbjct: 854 cccagcttcttattt--ttgaacctgagtagctcttagttcttatttatcagtctactg 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1106
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1096
Effective search space: 763912
Effective search space used: 763912
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_e07.g1 MSMg01no142_e07.g1 CHROMAT_FILE:
MSMg01no142_e07.g1 PHD_FILE: MSMg01no142_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:43 2005
(674 letters)
>mm_chr1_178383775_178384848
Length = 1074
Score = 837 bits (433), Expect = 0.0
Identities = 463/473 (97%), Gaps = 2/473 (0%)
Strand = Plus / Minus
Query: 203 ggggctggagaagccaaaagttctacatcttgatccaaagtcagccataagaagaccctt 262
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1072 ggggctggagaagccaaaagttctacatcttgatccaaaggcagccataagaagaccctt 1013
Query: 263 ttctgccctgggtggagcctgaacatagagggaaacctccaaagcccatcctcgcagtga 322
||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct: 1012 ttctgccctgggtggagcctgaacatagagggaaacccccaaagcctatccccgcagtga 953
Query: 323 tacatacacttcctccaacaaggccacacctcctaac-agtatcactctctatgggccaa 381
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 952 tacatacacttcctccaacaaggccacacctcctaacta-tatcactctctatgggccaa 894
Query: 382 gcatattcaaaccaccacacttgagtaaagggctggctgcagttaggtctgggtctgaag 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gcatattcaaaccaccacacttgagtaaagggctggctgcagttaggtctgggtctgaag 834
Query: 442 gcagacgggatggaggaacctttgtagccccacctccacctccatcctttctcagggctc 501
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 833 gcagacgggatggaggaacctttgtagcccctcctccacctccatcctttctcagggctc 774
Query: 502 agctgatgccacaggcactggtatgacttttggcttatttctatttatcccctacaaata 561
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 773 agctgatgccataggcactggtatgacttttggcttatttctatttaccccctacaaata 714
Query: 562 aataatgcattaatgttattcatttctttatgtaataactgcaaagggaaaaagccaaag 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aataatgcattaatgttattcatttctttatgtaataactgcaaagggaaaaagccaaag 654
Query: 622 ccattttcatgtctcagatatgacagaaaactctatgtcctttggaaagaaaa 674
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 653 ccattttcatgtctcagaaatgacagaaaactctatgtcctttggaaagaaaa 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
