Query= MSMg01no142_f20.b1 MSMg01no142_f20.b1 CHROMAT_FILE:
MSMg01no142_f20.b1 PHD_FILE: MSMg01no142_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:56 2005
(690 letters)
>mm_chr1_64801905_64802994
Length = 1090
Score = 1239 bits (641), Expect = 0.0
Identities = 681/701 (97%), Gaps = 14/701 (1%)
Strand = Plus / Plus
Query: 1 atttgaatttgcaattcttctgcctcagcctccgtagtactaggattaca---cccatgt 57
|||||||||||||||||||||||||||||||| | ||||||||||||||| | |||
Sbjct: 201 atttgaatttgcaattcttctgcctcagcctctggagtactaggattacagggc---tgt 257
Query: 58 gacaccatctctgtgttaaatcccccaattctaacgtgcgtctaaaactgagagccattg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gacaccatctctgtgttaaatcccccaattctaacgtgcgtctaaaactgagagccattg 317
Query: 118 ttatatgctggttcaaggtaaggctatgtaggatgaacccagccaaatgtacaaacagaa 177
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttatatgctggctcaaggtaaggctatgtaggatgaacccagccaaatgtacaaacagaa 377
Query: 178 gtcaaccaaaacaaaatgactaaggagaaacccaagctatacttaaaccccaacccaggg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtcaaccaaaacaaaatgactaaggagaaacccaagctatacttaaaccccaacccaggg 437
Query: 238 tgctatttctcctcttacaggcagaaatcttacttcctatcagcaagtcaacaggatgga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgctatttctcctcttacaggcagaaatcttacttcctatcagcaagtcaacaggatgga 497
Query: 298 aaaggtggttgttttaagcacgatccttcttttataaacagcttttcttcttctcacctc 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 498 aaaggtggttgttttaagcacgatccttcctttataaacagcttttcttcttctcacctc 557
Query: 358 ttaaagaaaaaacaaaa-------tacaaaaaaaa-cacccaaacctgccgtgtgctgcc 409
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 558 ttaaagaaaaaacaaaaaacaaaatacaaaaaaaaacacccaaacctgccgtgtgctgcc 617
Query: 410 gaagtgacgtttgcagactgcagcagagctctgagacccttttatgcaccaagcccccca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaagtgacgtttgcagactgcagcagagctctgagacccttttatgcaccaagcccccca 677
Query: 470 ctaaatcctcagtgcattatctccctcatccccacaacccccagtaataacagcctctcc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctaaatcctcagtgcattatctccctcatccccacaacccccagtaataacagcctctcc 737
Query: 530 cattttccccacgtgacagatgaggaaacccctgtatgaagagattaagtaacctgctga 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cattttccccacgtgacagatgaggaaacccctgtatgaagagattaagtaacctgctgg 797
Query: 590 agggcaagtcgtgagtagctggcagtgcttaactcgcaaggatccggcctgctctaactc 649
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 798 agggcaagtcgtgagtagctggcagtgcttaacttgcaaggatccggcctgctctaactc 857
Query: 650 cattgtggttttatgtgccggtgccaacttgcctctgctgt 690
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 cattgtggttttatgtgccggtgccaacttgcctctgctgt 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_f20.g1 MSMg01no142_f20.g1 CHROMAT_FILE:
MSMg01no142_f20.g1 PHD_FILE: MSMg01no142_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:56 2005
(223 letters)
>mm_chr1_64884886_64885507
Length = 622
Score = 385 bits (199), Expect = e-111
Identities = 214/219 (97%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 5 tattgttattcttgttttagagatgaaaaccttagcaggtaggcttgctctagaccccca 64
||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||
Sbjct: 422 tattgttattcttgttttagagatgaaaatcttagcagggaggcttgctctagatcacca 363
Query: 65 gttagttcagagttcaaaatttaggttcagaaaggctgttttcaacagcactcttacttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gttagttcagagttcaaaatttaggttcagaaaggctgttttcaacagcactcttacttt 303
Query: 125 ctaagtaagcagggggtgcctctggctccacagaccattaaccattatgatgtgagttgt 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctaagtaagc-gggggtgcctctggctccacagaccattaaccattatgatgtgagttgt 244
Query: 185 tacaatcattttaggtatagattaaaatattttatggaa 223
|||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tacaatcattttaggtatagattaaaatattttatggaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 622
Length adjustment: 9
Effective length of query: 214
Effective length of database: 613
Effective search space: 131182
Effective search space used: 131182
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
