BAC Information

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BAC

Clone NameMSMg01-142H03
Chromosome1 (Build37)
Map Location 101,408,754 - 101,409,444
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142H03.T7 (MSMg01no142_h03.b1)MSMg01-142H03.TJ (MSMg01no142_h03.g1)
ACCAG347053AG347054
length1,2491,207
length of high quality
(start - end)
692 (132 - 823)677 (130 - 806)
definitionCHROMAT_FILE: MSMg01no142_h03.b1 PHD_FILE: MSMg01no142_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:07 2005CHROMAT_FILE: MSMg01no142_h03.g1 PHD_FILE: MSMg01no142_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGAATCNNNNNNNNGGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGATTCTCTGGAAATCCTTTAGAGCTCATTGGNCTCT
TAGATTCTAACCTTTTTACCCTTCAATTCACTTGGGATGATTGTCAGCAG
CTCTTGCAGATCCACTGAGGAAAATGAATACATTATTTTGGAGGCCCAAA
AGAATGTTCCAGGAGCTAACAGCATTGCAACCCAGAAATCTGCTGACATA
GATGATGGATTTCCCCTCAGGAGACCAGCTTGAGTCTACAATATGGTTGA
AAGGGACCGTCTCTGAGTCTATTGCCAATCTCTAATGGCAGGTCTCAGGG
CAGCTGCTAGCCACATATTTAGCTAAGGTTTATGATGTCGGGCAGAAAGA
TAATGAAGGCCTTCCAGAATTGCTCGATTGTATTATGATCATTATACCCA
CCTGGAACCTGAGCAGGAGGAGAATTCTAACAAAGTATCACTGACATTTA
TAAATCAGTCAGCACCAGATATTAGAAGGAAGTTAAAGAACTTAGAAACA
TTAGGGGAAAAGTCATTGAGAGATTTTGTGGAGGTTTCGGAGAAAGTGTA
CTATATTAGGGTACACTTGCAGAATATTGTTGAAGGGAAAGAGCCTAAGG
GAGGTTGTAGACCAATCTTAGGTAAAAACCAATGTTTCTACTGAAGGACA
TTGGGCAGAAACCAGATCCAGGTGCTTAGCAAAGCATCGACCCCCTGTGT
TTATAGAGCTTTAACTGGTTGTATACCCAGTACAAGTCTGCCAATACCCC
ATGTGTCAAAAGGCACGAAAGGGTATCATCATCCCCCATATCAGAAAGAT
GCTGGCTTTGGGAGTACTCATGCTTGTCAATAGGCCTGGAATACTCCCTT
ATTGCCAGTGAAAAAACCCAAATTTCACGAACTATCACCCTGTCCAGGAA
CCTACAGGGAGTTTAAGTGCAGAATAATGGACATACACCCCCACAGTGCC
TTATCCCTTAAACCCCTAATTGAGTTCCCCGGGCCCCCAAATTTGGACTT
ATTATTTGGGAAATAAAACCCACAAGATATGGATGGCCTTTCTTTCTCGT
TTATTCCCTGGATATCCAAAATGCCCCAAAAATTTTTTTTCCTTCTTAAG
GGGCTGGTGTCTCCACAGGAGGGCGCTTTTAGGGGAAAACTCCTACCCTG
GAATGGTCCCTGTTTTCCAATCTTAAATATAATTCCCCCTCCCTATATC
NCCAGCCCTNNNNNATTCATTGGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAAGCGCCGNAAACCGAAAG
GCAGAGAAGCACCTGACCCTATGATCACCATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGCCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGTGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACTTTTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAAT
TTCCTAAACATATGAAACTCAACAAAAATGAAGACTGAAGTGTGAACACT
ATGCCCCTCCTTAGAAGTGGGAACAACACACCCTTGGAAGGAGTTACAGA
GACAAAGTTTGGAGCTGAGATAAAAGGATGGACCATGTAGACACTACCAT
ATCCGGNGATCCATCCCATAATCAGCTTCCAAATGCTGACACCATTGCAT
ACCCTAGCAAGATTATGCTGAAAGGACCCTGATATAGCTGCCTCTTGTCA
GAGTATGCCTGGGCCTACCAAACATAAAAGGGAAGGCTCACGGTCGGCTA
TTGGATGGATCCCATGGCCCCCCATGAAGGAGCGGAGAAAAAGTACCAAA
AAACTTAAGGGAATTCCACCCCGGAGGGGGAACACCTTTATGAATTACCC
CGTACCCCGGAAATTTTGACTCTTACCGGCCTAGGCTTCAAAAAAGGCCC
TAATCCGCCCCCTCGGGTAAAAAAAGCCCCCTTGTTCACCCCCACTTTTT
TTTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_h03.b1 MSMg01no142_h03.b1 CHROMAT_FILE:
MSMg01no142_h03.b1 PHD_FILE: MSMg01no142_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:07 2005
         (692 letters)



>mm_chr1_101408553_101409644
          Length = 1092

 Score = 1218 bits (630), Expect = 0.0
 Identities = 677/694 (97%), Gaps = 5/694 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggatgattgtcagcagctcttgcagatccactgaggaaaatgaatacattattttgg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 202 ttgggatgattgtcagcagctcttgcagatccactgaggaaaattaatacattattttgg 261

                                                                       
Query: 61  aggcccaaaagaatgttccaggagctaacagcattgcaacccagaaatctgctgacatag 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 262 aggcccaaaagaatgttccaggagctaacag-attgcaacccagaaatctgctgacatag 320

                                                                       
Query: 121 atgatggatttcccctcaggagaccagcttgagtctacaatatggttgaaagggaccgtc 180
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 321 atgatggatttcccctcaggagaccagcttgagactataatatggttgaaagggaccgtc 380

                                                                       
Query: 181 tctgagtctattgccaatctctaatggcaggtctcagggcagctgctagccacatattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgagtctattgccaatctctaatggcaggtctcagggcagctgctagccacatattta 440

                                                                       
Query: 241 gctaaggtttatgatgtcgggcagaaagataatgaaggccttc--cagaattgctcgatt 298
           ||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||
Sbjct: 441 gctaaggtttatgatgtcgggcagaaagataatgaaggcc--cagcagaattgctcgatt 498

                                                                       
Query: 299 gtattatgatcattatacccacctggaacctgagcaggaggagaattctaacaaagtatc 358
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 499 gtattatgatcattatacccacctagaacctgagcaggaggagaattctaacaaagtatc 558

                                                                       
Query: 359 actgacatttataaatcagtcagcaccagatattagaaggaagttaaagaacttagaaac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 actgacatttataaatcagtcagcaccagatattagaaggaagttaaagaacttagaaac 618

                                                                       
Query: 419 attaggggaaaagtcattgagagattttgtggaggtttcggagaaagtgtactatattag 478
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 619 attaggggaaaagtcattgagagattttgtggaggtttcggagaaagtgtgccatattag 678

                                                                       
Query: 479 ggtacacttgcagaatattgttgaagggaaagagcctaagggaggttgtagaccaatctt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggtacacttgcagaatattgttgaagggaaagagcctaagggaggttgtagaccaatctt 738

                                                                       
Query: 539 aggtaaaaaccaatgtttctactgaaggacattgggcagaaaccagatccaggtgcttag 598
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 739 aggtaaaaaccaatgtttctactgaaggacattgggcagaaactagatccaggtgcttgg 798

                                                                       
Query: 599 caaagcatcgaccccctgtgtttatagagctttaactggttgtatacccagtacaagtct 658
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 799 caaagcatcgacctcctgtgtttatagagctttaactggttttatacccagtacaagtct 858

                                             
Query: 659 gccaataccccatgtgtcaaaaggcacgaaaggg 692
           ||||||| |||||||||||| |||||||||||||
Sbjct: 859 gccaatatcccatgtgtcaagaggcacgaaaggg 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)