BAC Information

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BAC

Clone NameMSMg01-142K12
Chromosome1 (Build37)
Map Location 148,052,429 - 148,155,093
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142K12.T7 (MSMg01no142_k12.b1)MSMg01-142K12.TJ (MSMg01no142_k12.g1)
ACCAG347212AG347213
length1,2401,218
length of high quality
(start - end)		374 (133 - 506)545 (143 - 687)
definitionCHROMAT_FILE: MSMg01no142_k12.b1 PHD_FILE: MSMg01no142_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:37 2005CHROMAT_FILE: MSMg01no142_k12.g1 PHD_FILE: MSMg01no142_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,154,720 - 148,155,093)(148,052,429 - 148,052,973)
sequence
NNNAATCACTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATT
CTCATGACTAACTTTAACTCTTAAATAGCTCTGAAAGCCTCTACCTCAAC
TCTTTTTTCCTTTTTGCCCTAGAATACCCACCATGTGACTATGTGACCTA
TTGGGTCTCTATAGCCTGTTTCCTCTAAAGACAGGAGATATTCTCATTTC
TTATTTAACCTCCAGTGCTTATACTACAGATGAACATCTGACCTTCAATT
CCTACACTAGACTAAAGAAATAGGTATGGTTCACTGGTAAGAATATCAAA
CCCGTTTTTAGTTTAGACTACTAAATTGTTTCCTGAACTAGCCCTTTAAA
CACTCTAAGTATCCCAAATTGTACAATAAATAGAAAGAGTGGAGTCTGAT
ATGTGTTGTTTGATTTGACCTAATACAAAAGGATTTGAAGGTTTTGGTGT
AATATTATCATAGTCAGGTTATTTCCACAGTGAGACTTTGAGTCTAAAAT
TAAATGGCCTACCAATTCAGGTTGTGGGAAAGAAATTTCTGATAACCTGA
AAATGATCATTTTTTAATATCTTTATATGATTTATCTTGGATCATTAATT
TATGAGAGGTATAATAAGATTAATATTATTGCTACTTCTTTTTTTTTTCA
TCTCAATCTCTTGACCTTTGATAGCTCATTCTTAGGTCTTAATTCTGTTG
TTATTTGTTTTTTATATTTATTCTCTTTGTATTTTATAGTTTTTTGTATT
GTTTTTATAGTTTTATTTTCTTTTTCTTTTATTTTTTCTTTTTGATTTTA
TTATTTTTGTTTTCTATATTTTTTCTATATATTTATTTGTTTTTTTTTTT
TTTTTAACTTTATTTTTTTTTTTATTTTTTTTTTCTATTTCTTTTCTATT
TTTTTTATTATTTTTTGTTTTTTTTTTTGTTCTTTGTGTCTTCTCTTTTA
TTTTATCTTATTATTTTTATTATTTCTTTTTTTTTTATTTTTTTCTATTT
TTTCTATATTTTTTTTTTTATTTTTTTTTTATCTTATTTAATTTTTATTT
TTTATTTTTATTTTTTTATTTTTTCTTTTTTTTTTTTTTTTTTTTTCTTT
ATTTTTATTATTTTTTCTTTATCTATTTTATTCTTATTTACTCTATTTTT
TTTTTTTATTTTATCTGTTTTTTTTTCCTCTATAATTTCTTTCTTTTATA
ATTTTCTCTTTCTTATTTTCCTTATATTTATTTTTTATTT

CCATATTTNNNNNNAAAGATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTGCCTTGTTTCATTTTT
GTGAAAATATGGGTACTATCTTATAGTAAAGTCAAACCGCCGATGTGTAC
ATACACATAAAGAAGAGTTACCTGATTTATTCTGTTACCTTGCTCAAAAG
GACTGAAAGATTCCACGAAAATAGACCATTAAGTACAATAGAGCTCACTC
TCAGTATTTGCTGGGAGAATGGTGAGACTCTGCCAAACTTCTGTAAAGTC
AAACTTATAATTATCACTCACAAACGGTGAATTTATAGCACTTAAAGTCA
GTAAGCCATTTCAAACTTAAATACATCATTGTAGTTCCTTGACATTGAGT
ATCATAGTTGGTTACTTAAAAACACTGTGCACAGTTTAAAGCAGGATGTG
TCACCTCAGCACTTTATATTGATTGAACAAAATTTCCCTAACTGGAAGTT
GAAGCATTTCATCAGGCAGATTGTCCGTACCATGCAGGTTCAATAGACTC
ACCTGGGTCGCTAATGATAACAGAGTGGCATTCCACCAGAGGCTTTCTGA
TGAGGATAATAAATGGAGAGTGCTCGTCAGCTTGAAAGCCACTTTCTGAG
AATAAGAAGGGTTTTATTAGGAAGGAAAATTGGTCATGAACAATCACAAT
CCTTAAAGTACAGAAGTATCATATAAGCTGTTGAGGAAATACTGCTAAAG
ACCATATGATCAAATGTTCTGTATGAAACATTCTACTGTTTCTGTTTAAA
ACAGGCTTTATACGATAGTTTTGATCTTACAATGATTTTCTCCTATCATA
CTCATGTTGTGTTTCTATTTATATAATCCTTTATCCTCTTTTTCTGTTNA
TCTCTTTTTTTTTTTCTTCTCTTCTTTATTCTTTAATGTTTTTCGTTCTT
CTTTTTTTTCTTTCTCCATCTTCCTCTATTCATACCCTCCTTTCCTTTTT
TTAAATCCCATTTTATTCTATCCTTTTCTCCTTTTTCCTTTACCCTTTTT
TCTTCTTCTCTCTTTCTTATTTTTTTTCTTCCTCTTGTTCCCTTCTCCCT
TTTCTTCTCCTCTTCCTCATTATTCTTTTTTATATTCTTCTACATACTTT
TTTTTCTCCTTCTTTCTCCTACTTTTTATTTTTCTTTACTGACTCTTTTC
TCTTATTCTTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_k12.b1 MSMg01no142_k12.b1 CHROMAT_FILE:
MSMg01no142_k12.b1 PHD_FILE: MSMg01no142_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:37 2005
         (374 letters)



>mm_chr1_148154520_148155293
          Length = 774

 Score =  700 bits (362), Expect = 0.0
 Identities = 371/374 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtgactatgtgacctattgggtctctatagcctgtttcctctaaagacaggagatatt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 574 atgtgactatgtgacctattgggtttctatagcctgtttcctctaaagacaggagatatt 515

                                                                       
Query: 61  ctcatttcttatttaacctccagtgcttatactacagatgaacatctgaccttcaattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctcatttcttatttaacctccagtgcttatactacagatgaacatctgaccttcaattcc 455

                                                                       
Query: 121 tacactagactaaagaaataggtatggttcactggtaagaatatcaaacccgtttttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tacactagactaaagaaataggtatggttcactggtaagaatatcaaacccgtttttagt 395

                                                                       
Query: 181 ttagactactaaattgtttcctgaactagccctttaaacactctaagtatcccaaattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttagactactaaattgtttcctgaactagccctttaaacactctaagtatcccaaattgt 335

                                                                       
Query: 241 acaataaatagaaagagtggagtctgatatgtgttgtttgatttgacctaatacaaaagg 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 334 acaataaatagaaagagtggagtctgaaatgtgttgtttgatttgacctaatacaaaagg 275

                                                                       
Query: 301 atttgaaggttttggtgtaatattatcatagtcaggttatttccacagtgagactttgag 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atttgaaggttttggtgtaacattatcatagtcaggttatttccacagtgagactttgag 215

                         
Query: 361 tctaaaattaaatg 374
           ||||||||||||||
Sbjct: 214 tctaaaattaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no142_k12.g1 MSMg01no142_k12.g1 CHROMAT_FILE:
MSMg01no142_k12.g1 PHD_FILE: MSMg01no142_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:37 2005
         (545 letters)



>mm_chr1_148052229_148053173
          Length = 945

 Score = 1031 bits (533), Expect = 0.0
 Identities = 542/545 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgtacatacacataaagaagagttacctgatttattctgttaccttgctcaaaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgtacatacacataaagaagagttacctgatttattctgttaccttgctcaaaagga 260

                                                                       
Query: 61  ctgaaagattccacgaaaatagaccattaagtacaatagagctcactctcagtatttgct 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaaagattccacaaaaatagaccattaagtacaatagagctcactctcagtatttgct 320

                                                                       
Query: 121 gggagaatggtgagactctgccaaacttctgtaaagtcaaacttataattatcactcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagaatggtgagactctgccaaacttctgtaaagtcaaacttataattatcactcaca 380

                                                                       
Query: 181 aacggtgaatttatagcacttaaagtcagtaagccatttcaaacttaaatacatcattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacggtgaatttatagcacttaaagtcagtaagccatttcaaacttaaatacatcattgt 440

                                                                       
Query: 241 agttccttgacattgagtatcatagttggttacttaaaaacactgtgcacagtttaaagc 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 agttccttgacattgagtatcatagttggctacttaaaaacactgtgcacagtttaaagc 500

                                                                       
Query: 301 aggatgtgtcacctcagcactttatattgattgaacaaaatttccctaactggaagttga 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 aggatgtgtcacctcagcactttatattgattgaacgaaatttccctaactggaagttga 560

                                                                       
Query: 361 agcatttcatcaggcagattgtccgtaccatgcaggttcaatagactcacctgggtcgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcatttcatcaggcagattgtccgtaccatgcaggttcaatagactcacctgggtcgct 620

                                                                       
Query: 421 aatgataacagagtggcattccaccagaggctttctgatgaggataataaatggagagtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgataacagagtggcattccaccagaggctttctgatgaggataataaatggagagtg 680

                                                                       
Query: 481 ctcgtcagcttgaaagccactttctgagaataagaagggttttattaggaaggaaaattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcgtcagcttgaaagccactttctgagaataagaagggttttattaggaaggaaaattg 740

                
Query: 541 gtcat 545
           |||||
Sbjct: 741 gtcat 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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