Query= MSMg01no142_n06.b1 MSMg01no142_n06.b1 CHROMAT_FILE:
MSMg01no142_n06.b1 PHD_FILE: MSMg01no142_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:00 2005
(602 letters)
>mm_chr1_142735175_142736177
Length = 1003
Score = 1089 bits (563), Expect = 0.0
Identities = 593/603 (98%), Gaps = 1/603 (0%)
Strand = Plus / Plus
Query: 1 aggtaaattaacccccattatgctttcggggacattaagaagcattctttttacgtcaat 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtaaattaactctcattatgctttcggggacattaagaagcattctttttacgtcaat 260
Query: 61 gtaattttggttttgatgctgtcatcatggttgtccccggtttataaatgacctcttcca 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ataattttggttttgatgctgtcatcatggttgtccccagtttataaatgacctcttcca 320
Query: 121 attgtgacacctgctacattacctctaaaagcagaagctataatgctatgagggtccttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtgacacctgctacattacctctaaaagcagaagctataatgctatgagggtccttg 380
Query: 181 aaaggttaatttacatttcagcaatcatgactgacaataagaggggatttggctggctga 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggttaatttacatttcagcaatcacgactgacaataagaggggatttggctggctga 440
Query: 241 attactgtgattacaatatgctagaaagtatgtaaatttgaattatagtggaggaaaaat 300
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 441 attactgtgattacaatatgctagaaagtatgtaaatttgtattaaagtggaggaaaaat 500
Query: 301 gaatttaagccgaatttgatttatgctagtgctattcatgacataacttacagtgtaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatttaagccgaatttgatttatgctagtgctattcatgacataacttacagtgtaaac 560
Query: 361 aaaattgcggtagaatactattcaaatctaaatgtaaacactatagacagttgggatgtc 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 aaaattgcggtagaatactattcaaatctaaatgtaaacactatagacaggtgggatgtc 620
Query: 421 tgcctgctcactgaacatttttattgtagcagtgtggtattaagcagagtatagtcaaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 tgcctgctcactgaacatttttattgtagcagtgtggtattaagcagactatagtcaaaa 680
Query: 481 tttatttttgaatggttta-aatttacaaatgttgtcagtttaatattttagctaatatt 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttatttttgaatggtttataatttacaaatgttgtcagtttaatattttagctaatatt 740
Query: 540 ttgaatatttaacatatatggaaagacttacataatttttatttatatgcctaagtatac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgaatatttaacatatatggaaagacttacataatttttatttatatgcctaagtatac 800
Query: 600 tat 602
|||
Sbjct: 801 tat 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space: 587856
Effective search space used: 587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_n06.g1 MSMg01no142_n06.g1 CHROMAT_FILE:
MSMg01no142_n06.g1 PHD_FILE: MSMg01no142_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:00 2005
(319 letters)
>mm_chr1_142838430_142839149
Length = 720
Score = 542 bits (280), Expect = e-158
Identities = 310/320 (96%), Gaps = 3/320 (0%)
Strand = Plus / Minus
Query: 2 tctt-accaacatttcctttttagtgctgggaagatcctttgttgggtaaagcagccccc 60
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 520 tcttaaccaacatttcctttttagtgctgggaagatcctttgttgggtaaagcaacttac 461
Query: 61 ctgtaagtcagcatacctaaatttggatgctcttccctatgtaataggcagacacaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 460 atgtaagtcagcatacctaaatttggatgctcttccctatgtaataggcaaacacaaaag 401
Query: 121 taccagtggttataatcccagcacattactaaatgatagcagtcaagctcag-gaaatct 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 400 taccagtggttataatcccagcacattactaaatgatagcagtcaagctcagcg-aatct 342
Query: 180 gtagaaaatgtcatggcagttaacctggataatgttgccaagtggaaaagcagccttcag 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 341 gtagaaaatgtcatggcagttaacctggataatgttgccatgtggaaaagcagccttcag 282
Query: 240 tccctgaaggttgtcctcgatctccacaaaaacccgaggcagagtacagattcacttgaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tccctgaaggttgtcctcgatctccacaaaaacccgaggcagagtacagattcacttgaa 222
Query: 300 cgtggaagaaaaagacctct 319
||||||||||||||||||||
Sbjct: 221 cgtggaagaaaaagacctct 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
