Query= MSMg01no142_n22.b1 MSMg01no142_n22.b1 CHROMAT_FILE:
MSMg01no142_n22.b1 PHD_FILE: MSMg01no142_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:06 2005
(624 letters)
>mm_chr1_149800143_149801166
Length = 1024
Score = 909 bits (470), Expect = 0.0
Identities = 494/502 (98%)
Strand = Plus / Minus
Query: 1 aagcacccaaaaaatgttcaacatctttaatcttcagggaaatgtaaaccaaaacaaccc 60
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 502 aagcacccaaaaaatgttcaacatctttaatcatcagggaaatgtaaatcaaaacaaccc 443
Query: 61 tgagattcctcctcatactattcagaatggctaagatagaatagcatgtttttattgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgagattcctcctcatactattcagaatggctaagatagaatagcatgtttttattgttt 383
Query: 121 atttttgtttattccgagttttctgatgagctcagaatatttgctattatgatttatact 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 382 atttttgtttattccgagttttctgacgagctcagaatatttgctattatgatttatact 323
Query: 181 ttactaatagtatatggcattgcttctcaagtctttacaggattaggcttgtcttctttc 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 322 ttactaatagtatatggcattgcttctcaagtctctacaggattaggcttgtcttctttc 263
Query: 241 acagaggccagaccaggtagtcctctgctgtgtatgtggcagaaggcttggactagctat 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 acagaggccagaccaggtagtcctctgctgtgtatgtggcagaaggtttggactagctat 203
Query: 301 tatatgctgccaggttgttgactcagtgtctgtgagatctcaggggtccaggttagttgc 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tatatgctgccaggttggtgactcagtgtctgtgagatctcaggggtccaggttagttgc 143
Query: 361 ggctgctagtctttctatagagtcccctccatctcaacttcttcacaacttcccctaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ggctgctagtctttctatagagtcccctccatctcaacttcttcacaacttcccctaatt 83
Query: 421 caaccataggatttccgacttcagttcattggttgggtgtaggtatttgcaactgtctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 82 caaccataggatttccgacttcagttcattggttgggtgtaggtatttgcatctgtttca 23
Query: 481 gtcagctgcttgttgggcctct 502
||||||||||||||||||||||
Sbjct: 22 gtcagctgcttgttgggcctct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_n22.g1 MSMg01no142_n22.g1 CHROMAT_FILE:
MSMg01no142_n22.g1 PHD_FILE: MSMg01no142_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:06 2005
(500 letters)
>mm_chr1_149640648_149641546
Length = 899
Score = 951 bits (492), Expect = 0.0
Identities = 498/500 (99%), Gaps = 1/500 (0%)
Strand = Plus / Plus
Query: 1 ctttagaactcatgaaatgaacctcactagttagcaaaactacaagctttacaataattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttagaactcatgaaatgaacctcactagttagcaaaactacaagctttacaataattc 260
Query: 61 ttaacccaaaacatttatagatttttgtcaatgtgattgacaaattactaatgaaagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaacccaaaacatttatagatttttgtcaatgtgattgacaaattactaatgaaagtcc 320
Query: 121 taaaactaagggggaattacaggtcaaaaattgtgaagttatattatttgtggtaatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 taaaactaagggggaattacaggtcaaaaattgtgaagttatattatttgtggcaatttt 380
Query: 181 agtgactttagaacacaaataacaaactcaaaattctctaggttacaagtcctccaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgactttagaacacaaataacaaactcaaaattctctaggttacaagtcctccaaaga 440
Query: 241 gggtagctcaactaagattctggtagccatgcatctttaccagacgtgatgtgtagtaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtagctcaactaagattctggtagccatgcatctttaccagacgtgatgtgtagtaga 500
Query: 301 gcttttaaagaaatatcatctataaaattctgtaattaatcctaaaaacaaaatgaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttttaaagaaatatcatctataaaattctgtaattaatcctaaaaacaaaatgaatac 560
Query: 361 atttgaaatcagttatgacataagtcctgctatattttgctagtagaaattttttactat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 atttgaaatcagttatgacataagtcctgctatattttgctagtagaaattttt-actat 619
Query: 421 ctctgtgagtataaaatcttccacactgagaaatattttgattttcttcaaaatttcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctctgtgagtataaaatcttccacactgagaaatattttgattttcttcaaaatttcaaa 679
Query: 481 gattatagacattataaaaa 500
||||||||||||||||||||
Sbjct: 680 gattatagacattataaaaa 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 899
Length adjustment: 10
Effective length of query: 490
Effective length of database: 889
Effective search space: 435610
Effective search space used: 435610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
