Query= MSMg01no143_d16.b1 MSMg01no143_d16.b1 CHROMAT_FILE:
MSMg01no143_d16.b1 PHD_FILE: MSMg01no143_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:44 2005
(360 letters)
>mm_chr1_64199698_64200458
Length = 761
Score = 634 bits (328), Expect = 0.0
Identities = 349/356 (98%), Gaps = 1/356 (0%)
Strand = Plus / Minus
Query: 6 gaattcactaggc-tcaacacactgtgtttccatgggacgatggtttctacagggtggac 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaattcactaggcattaacacactgtgtttccatgggacgatggtttctacagggtggac 502
Query: 65 aagaggtattgtgaatacagaatgcttgtgcaatagttttagacgtggccagaaggaaat 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 aagaggtattgtgaatacagaatgcttctgcaatagttttagacgtggccagaaggaaat 442
Query: 125 ccaataaacaaccttccacatcccattgtgtggagttgggaatgcccaaaggtctgtaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaataaacaaccttccacatcccattgtgtggagttgggaatgcccaaaggtctgtaac 382
Query: 185 tggtctgcagggctgagaaagtatgaggtacatgccattagcaaggctaaaagctgaggg 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tggtctgcagggctgagaaagtatgaggcacatgccattagcaaggctaaaagctgaggg 322
Query: 245 ccatgagcagagggccagtgaaagctagatatttgcagggaaatctgaagttcaagccct 304
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ccgtgagcagagggccagtgaaagctagatagttgcagggaaatctgaagttcaagccct 262
Query: 305 ggagagaccaaatcccgatcattactaaggtcagagtgcaaaggccacacaggtga 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ggagagaccaaatcccgatcattactaaggtcagaatgcaaaggccacacaggtga 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 761
Length adjustment: 9
Effective length of query: 351
Effective length of database: 752
Effective search space: 263952
Effective search space used: 263952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_d16.g1 MSMg01no143_d16.g1 CHROMAT_FILE:
MSMg01no143_d16.g1 PHD_FILE: MSMg01no143_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:44 2005
(446 letters)
>mm_chr1_64022569_64023419
Length = 851
Score = 795 bits (411), Expect = 0.0
Identities = 439/451 (97%), Gaps = 5/451 (1%)
Strand = Plus / Plus
Query: 1 tctggggtctgttgtgttccaacactgtcttaagtgagaaatgggaagatgatgtccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggggtctgttgtgttccaacactgtcttaagtgagaaatgggaagatgatgtccatt 260
Query: 61 aaccagggagtgacatacaagaggggtagattagggcaggaaagggtacaggtgatggct 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccggggagtgacatacaagaggggtagattagggcaggaaagggtacaggtgatggct 320
Query: 121 ggcagaaagtgacaagttcttttgtgtgcaatggactccaagcacttaaatgaactcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcagaaagtgacaagttcttttgtgtgcaatggactccaagcacttaaatgaactcaga 380
Query: 181 aaaggagttcaggtaggcattggcaaataatatccagagcactgaatttaatttctgttc 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggagttcagataggcattggcaaataatatccagagcactgaatttaatttctgttc 440
Query: 241 tatagaagaaacttggtttggttcctgcataattttccttttttttttt-----cagtct 295
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tatagaagaaacttggtttggttcctgcataattttccttttttttttttttttcagtct 500
Query: 296 tatccacagaatcagctcatttcttctgacccatacctttaaattcttcccaagtcactg 355
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 501 tatccacagaatcagctcatttcttctgacccatacctttaaattctttcaaagtcactg 560
Query: 356 ccaaaagagtgacttggtttgtatttggaaactggccattcctaaacacaagtctcactc 415
||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 561 ccaaaagtgtgacttggtttgtatttggaaactggccatttctaaacacaagtcacactc 620
Query: 416 tatcatgcgtcgtcatggtgggataaaagag 446
|||||||||||||||||||||||||||||||
Sbjct: 621 tatcatgcgtcgtcatggtgggataaaagag 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 851
Length adjustment: 10
Effective length of query: 436
Effective length of database: 841
Effective search space: 366676
Effective search space used: 366676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
