Query= MSMg01no143_g13.b1 MSMg01no143_g13.b1 CHROMAT_FILE:
MSMg01no143_g13.b1 PHD_FILE: MSMg01no143_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:58 2005
(339 letters)
>mm_chr1_56447866_56448604
Length = 739
Score = 640 bits (331), Expect = 0.0
Identities = 337/339 (99%)
Strand = Plus / Plus
Query: 1 caacctcctgaaagatgtcctttgttctgcattgaattattacctcccttttactctcct 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 caacctcctgaaagatgtcctttgttctgcattgaattattaccttccttttactctcct 260
Query: 61 ccatacagaaggatgaaatgtcagtggttcatggaatcaggagaaagggggcacacaccc 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatacacaaggatgaaatgtcagtggttcatggaatcaggagaaagggggcacacaccc 320
Query: 121 agcaataactgaagatccttagagctgaacaaccacatgcaaacacttcatcatgtgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaataactgaagatccttagagctgaacaaccacatgcaaacacttcatcatgtgaac 380
Query: 181 accctgtatattcttgctctggtctcattgtatgagcaaatcatcttgtcctaagttatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accctgtatattcttgctctggtctcattgtatgagcaaatcatcttgtcctaagttatt 440
Query: 241 catgttagaaattctgatgcactaaccaagcacagacataagtctatgtctaatataagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgttagaaattctgatgcactaaccaagcacagacataagtctatgtctaatataagg 500
Query: 301 ctgaaggcagggaaatagatacatatgacacagattgta 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaaggcagggaaatagatacatatgacacagattgta 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_g13.g1 MSMg01no143_g13.g1 CHROMAT_FILE:
MSMg01no143_g13.g1 PHD_FILE: MSMg01no143_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:58 2005
(574 letters)
>mm_chr1_56580676_56581650
Length = 975
Score = 1058 bits (547), Expect = 0.0
Identities = 568/575 (98%), Gaps = 1/575 (0%)
Strand = Plus / Minus
Query: 1 tctttggactatttgtagttaacagctgtttagtaagaat-ctataaacagtcccctggt 59
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 775 tctttggactatttgtagttaacagctgtttagtaagaatcctataaacagtcccctggt 716
Query: 60 ctttcatcctattttgtaaaatgttctattttgaccaaatagatttgcttgcagaagatt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ctttcatcctattttgtaaaatgttctattttgaccaaatagatttgcttgcagaagatt 656
Query: 120 tgagaaaaagcaaactctctatagtgtaaggtgtaaatatctccctttcctgtttattcc 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgagaaaaagcaaactctctattgtgtaaggtgtaaatatctccctttcctgtttattcc 596
Query: 180 tctgcggctcctttgctcatcgtaagaaaccaaatttgtcaaaatacagaacttcttaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tctgcggctcctttgctcatcgtaagaaaccaaatttgtcaaaatacagaacttcttaga 536
Query: 240 gctccttcttctcttttctgcttaactattaattcatcttgcttgttcactgtgctgttt 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 535 gctccaccttctcttttctgcttaactattaattcatcttgcttgttcactgtgttgttt 476
Query: 300 attgatttttgaaaaagaaaataagtaaatatattattttattcacccactgcaaattgg 359
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 475 attgatttttgaaaaagaaaataagtaaatatattattttattcagtcactgcaaattgg 416
Query: 360 aggctctttatatgatttaaaatctattacttttacaaagaaaacaaaatgtatgcttag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aggctctttatatgatttaaaatctattacttttacaaagaaaacaaaatgtatgcttag 356
Query: 420 aatcatgagtccatttcagttacattctacaaatatttcctaagtgctaaagcaataggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aatcatgagtccatttcagttacattctacaaatatttcctaagtgctaaagcaataggg 296
Query: 480 cccacttttctagatgcctgagataaaaggtgaatggcatgtactccctgtattgagaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cccacttttctagatgcctgagataaaaggtgaatggcatgtactccctgtattgagaaa 236
Query: 540 tttaccattcaatgggggtagactgctacagatgc 574
|||||||||||||||||||||||||||||||||||
Sbjct: 235 tttaccattcaatgggggtagactgctacagatgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space: 544260
Effective search space used: 544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
