BAC Information

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BAC

Clone NameMSMg01-143I15
Chromosome1 (Build37)
Map Location 54,046,583 - 54,046,919
singlet/doubletsinglet
Overlap geneHecw2
Upstream geneGdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143I15.T7 (MSMg01no143_i15.b1)MSMg01-143I15.TJ (MSMg01no143_i15.g1)
ACCAG347859AG347860
length705684
length of high quality
(start - end)		79 (41 - 119)344 (73 - 416)
definitionCHROMAT_FILE: MSMg01no143_i15.b1 PHD_FILE: MSMg01no143_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:07 2005CHROMAT_FILE: MSMg01no143_i15.g1 PHD_FILE: MSMg01no143_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTAATTTGCGGCGCTATACGACTCCTATAGTCCGAGGTCCGCGGATTC
ACCTGCCCGTGCTTGCACAGCATTTCCCTTTCAGGGATGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTCNNACAANAAAAATAAAAATAAAAAACAAAAA
AAAAATAACCAACAACACAAACAAAACACCCAACNACACCAAAAACAAAC
AACAAAAAAAACACACACTAACCAAAATTAACCACATATAACTAATAAAA
AATATAACAAAAAAAAAATAAAATACTAAACACTTAAATAAAACACAACA
NACAACATTTTTTTAACAAAATTATAAACATTATAACATTACCCAATTTT
TCCTACCCCCCACCACAAAAAAACATAATATACATAACGTAAAATTAATA
ATGGTGGTACAAACCCCCAAAAANNNNAAANAAATAAAAAATAAATACAC
CCATCTTACCACTTATTTATTTTCAAACACCATTATCATAATATAACAAA
AACAACCTCTATAAAAATATATTTAATTTTTTATATCCCCCTTTACCATA
AACACCCTATCAATAAATAATAATCCCNACCCAATATTATACACACCAAA
TTCACCTCTCCAATAATAACAAACACCCCCCACTACAATATACATAACCC
AAACAATATAATTTCCTCCCAAATAAAAAACACTTATGTACAAAAACCAC
AATTT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTATGCCCCTGGATCTGTAAGCTCCAAG
TAAAACCTTTCTTCTATAGGTTGCCCAGGTTATGCGTTTTGCCACAGCAA
TAGGAAAAAAAAAGTCCTATAAGGTACTAGAGACATGGCTGGATGGTTAC
AAGTGCTTATTGCTCTTGCAGAGGACCTGGGTTCAGTTCCCAGCAACCTT
GACTTGGGGTTCTCAACCACTGTGACTCAGCGCCCTTGAGCATTTGCACC
CACATACACACATAATGAAAAGTAAACAGAACTATTCTTATGTATAAAGA
AGAGTCCTCCCTTCCCCCAGAACGAGGCTACTCCAGAGAGTAGCCAGAAT
CCTTGAGTGGTGATAGCCCACCAGGGATGAAGCTTACAGGGGGAGCTCTA
AGCACATTATGGCCACTTTGTGGACTGCCAAGTGATCTTCATGGTATTAG
GGTTGTAAGGCTGTAGCTTTTCAAAGCTACAATGAAGCTGGAGATGAAAT
AAGTAAGCTTTAAAGCACTGTACTTCTTATATACTTAGAAGCCTTTGGTT
AATTACCAGAGTGCTGAANAAGGCAACTTTGACAGTTTCTTCCAGCACTC
ATTGGTGTTTAGAGAAGACTTTTTTTTTTAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_i15.g1 MSMg01no143_i15.g1 CHROMAT_FILE:
MSMg01no143_i15.g1 PHD_FILE: MSMg01no143_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:08 2005
         (344 letters)



>mm_chr1_54046377_54047123
          Length = 747

 Score =  501 bits (259), Expect = e-146
 Identities = 322/347 (92%), Gaps = 17/347 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatgcccctggatctgtaagctccaagtaaaacctttcttctataggttgcccaggtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ctatgcccctggatctgtaagctccaagtaaaacctttcttctataggttgcccaggtta 266

                                                                       
Query: 61  tgcgttttgccacagcaataggaaaaaaaaagtcctataaggtactagagacatggctgg 120
           |||||||| ||||||||||| ||||||||||||||||||||||||| |||| |||||| |
Sbjct: 267 tgcgttttaccacagcaata-gaaaaaaaaagtcctataaggtactggagatatggcttg 325

                                                                       
Query: 121 atggttacaagtgcttattgctcttgcagaggacctgggttcagttcccagcaaccttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atggttacaagtgcttattgctcttgcagaggacctgggttcagttcccagcaaccttga 385

                                                                       
Query: 181 cttggggttctcaaccactgtgactcagcgcccttgagcatttgcacccacatacacaca 240
           ||||||||||  ||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cttggggttc--aag---tgtgactcagcgcccttgagcatttgcacccacatacacaca 440

                                                                       
Query: 241 taatgaaaagtaaacag-aactattctt-atgtataaagaagagtcc-tcccttcc-ccc 296
           |||| ||||||||| || ||||||| || || |||||||||||| || ||||  || |||
Sbjct: 441 taataaaaagtaaa-aggaactatt-ttcatttataaagaagagcccctccc--ccaccc 496

                                                          
Query: 297 ---agaacgaggctactccagagagtagccagaatccttgagtggtg 340
              ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctcagaacgaggctactccagagagtagccagaatccttgagtggtg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 747
Length adjustment: 9
Effective length of query: 335
Effective length of database: 738
Effective search space:   247230
Effective search space used:   247230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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