BAC Information

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BAC

Clone NameMSMg01-143M21
Chromosome1 (Build37)
Map Location 173,467,877 - 173,468,477
singlet/doubletsinglet
Overlap genenone
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
Downstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143M21.T7 (MSMg01no143_m21.b1)MSMg01-143M21.TJ (MSMg01no143_m21.g1)
ACCAG348054AG348055
length674675
length of high quality
(start - end)		607 (68 - 674)601 (75 - 675)
definitionCHROMAT_FILE: MSMg01no143_m21.b1 PHD_FILE: MSMg01no143_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:27 2005CHROMAT_FILE: MSMg01no143_m21.g1 PHD_FILE: MSMg01no143_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAA
TTCAGGGATCTAACAGCGTGGAAAATTTTGAATGTCATGTCGAGCTGGTA
TCGGCTTCTGGAATACCGAAAGGATCTCCCATCTCTGCTCCATCGTTTGT
GCTTGTGGGACCATCCACCACATCCACAGGGGCAACTGGATCAGGAGCCT
CATTCTTGCAGCGTCTCACCAATCTCTCCGGCACCCAAAGAGGTTCCGTC
TGGTCCTGTGGAAACACACAAACAGACCCTCTCGCCCACGTCAACACCAG
ATCTGGTCGATCCTCTCCAAATCTCCAGACAGAAGGTCCACCTACAGGTG
GCTGCTGAGGAGGCATAGGGAGGCGGCGCAAAAGCTAATTCTCCTTCCTC
CTCCGCCTCAGCTCTGCCGNCCTGTCCTTTCTGTCCACCTGATAACACCG
TGTCTCCTTTCTTTTTCCTTTTTCTTTTTAAGCCCTTTTCCTCTTCCGAC
ATACTTTCTTGTTGCTCTGTAAGGATTTTCTGACCTGTCTTGACTGCCTC
TACACACAGTTTCAAACAGTAACAGAGTCCATATATCAGAACAAACAAGA
CCAAAACTATCAGACCTACCCACAAAGGGTCAATGGAAGAAAAAAGCATA
ACTACACAGCGAGGATCTATTGAT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGATTGCACACACACCCTTTCAGATC
TATCAAATGATGACATTATCTTTCCTCTCACTTTTCATTTATCACTACTT
TGCCATGCAACAACAAACAGTCTGTTTTTACTTTCTACCTGCAAGATCCA
GAACTTCAGTGATCTTGCAGCAGGCCATGGACCAAAAACCCCCAGGCGAT
GACCTGAGCAACCTCAAGTTCACTTCAGGGAAAACTCAGGGCCACAATGC
AGGAAGCCCTTCCATTACCAGTGTCTGTCTGATCGTTTGCTTATACTGTA
ATGGTAAATACTGGCCCCCAATTGGCCCTAGAGATGAGAGAGTGTGCACA
TGCCCAGGAGACCTTATACAACCTTGCTCCCAAGTAATCCCTTATTGGTA
AATATGGATGCCTAAAGCCAGCAATTGGGCAGAGGAGAGAGGCAGGGCTC
TTGGGTTCCAGGGCTGGGGGTGTGAGGAGACCATAAGGAGAGAGAAGAAG
GTGGACAGAGGAAGATGCCACCATAGAGTAGTTGAGTCATAAAAATATGG
TCATGGGGGACTAGCCAATTGGATTTAGGAGCTGCCAAAATGGAACATGA
CAAATTATTAAATGGTGTTAATGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_m21.g1 MSMg01no143_m21.g1 CHROMAT_FILE:
MSMg01no143_m21.g1 PHD_FILE: MSMg01no143_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:27 2005
         (601 letters)



>mm_chr1_173467677_173468677
          Length = 1001

 Score = 1154 bits (597), Expect = 0.0
 Identities = 600/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattgcacacacaccctttcagatctatcaaatgatgacattatctttcctctcacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agattgcacacacaccctttcagatctatcaaatgatgacattatctttcctctcacttt 260

                                                                       
Query: 61  tcatttatcactactttgccatgcaacaacaaacagtctgtttttactttctacctgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatttatcactactttgccatgcaacaacaaacagtctgtttttactttctacctgcaa 320

                                                                       
Query: 121 gatccagaacttcagtgatcttgcagcaggccatggaccaaaaacccccaggcgatgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatccagaacttcagtgatcttgcagcaggccatggaccaaaaacccccaggcgatgacc 380

                                                                       
Query: 181 tgagcaacctcaagttcacttcagggaaaactcagggccacaatgcaggaagcccttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagcaacctcaagttcacttcagggaaaactcagggccacaatgcaggaagcccttcca 440

                                                                       
Query: 241 ttaccagtgtctgtctgatcgtttgcttatactgtaatggtaaatactggcccccaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaccagtgtctgtctgatcgtttgcttatactgtaatggtaaatactggcccccaattg 500

                                                                       
Query: 301 gccctagagatgagagagtgtgcacatgcccaggagaccttatacaaccttgctcccaag 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gccctagagatgagagagtgtgcacatgcccaggagaccttatataaccttgctcccaag 560

                                                                       
Query: 361 taatcccttattggtaaatatggatgcctaaagccagcaattgggcagaggagagaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatcccttattggtaaatatggatgcctaaagccagcaattgggcagaggagagaggca 620

                                                                       
Query: 421 gggctcttgggttccagggctgggggtgtgaggagaccataaggagagagaagaaggtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggctcttgggttccagggctgggggtgtgaggagaccataaggagagagaagaaggtgg 680

                                                                       
Query: 481 acagaggaagatgccaccatagagtagttgagtcataaaaatatggtcatgggggactag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagaggaagatgccaccatagagtagttgagtcataaaaatatggtcatgggggactag 740

                                                                       
Query: 541 ccaattggatttaggagctgccaaaatggaacatgacaaattattaaatggtgttaatgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaattggatttaggagctgccaaaatggaacatgacaaattattaaatggtgttaatgc 800

            
Query: 601 g 601
           |
Sbjct: 801 g 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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