BAC Information

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BAC

Clone NameMSMg01-144A11
Chromosome1 (Build37)
Map Location 172,629,408 - 172,769,050
singlet/doubletdoublet
Overlap geneAtf6
Upstream geneRgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144A11.T7 (MSMg01no144_a11.b1)MSMg01-144A11.TJ (MSMg01no144_a11.g1)
ACCAG348209AG348210
length755789
length of high quality
(start - end)
170 (34 - 203)196 (74 - 269)
definitionCHROMAT_FILE: MSMg01no144_a11.b1 PHD_FILE: MSMg01no144_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:44 2005CHROMAT_FILE: MSMg01no144_a11.g1 PHD_FILE: MSMg01no144_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,629,408 - 172,629,571)(172,768,855 - 172,769,050)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTTCCA
TCTTCTCAGGAGTGGCTCCTTCTTCTTTTTTGGTCTTTGTGTTGCTTCAG
GCTTCTTCTTGGGCCAGCCGCTATCCTTTCTCACCAACACCTCACACCAA
CCCAAGCCTTCTCTCTCCCCCTCTGTTTATACCATTTCTAGCAGTTTCTC
TGATTACAGACGCTTGCCAGTCAAATCTTCTCACCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTCCCCTCCCCCAGT
GCCTCCCTGTTCTCCTCTCTTCTTCCCTCAGTCCTATTCTCTCTTCTTCT
CAGAACATGTCATTGCTTCCCAGAACGTTCCATCTTGTAGCTATGCCTAC
TTTCATGCCCCCCCCCGCTTCTATCATCCGCTCACCATCTGTCTGACTTT
ATCTCCTATATACACCCCTATTATTCCCCCCTCTCTCTTTTACCCTCCTC
TCTTTCCTCTTCTTTCGCTATCTCCTTGTCTCGTGTTTTGTTTCTCTTTT
ATCTGCCTTTCCCTTTTTGCTGCGTTCTCTTGTATCCTTTGCTTTTTCCT
CCCGACTCGTCTTGACTTTGTCTCGCTTTCCCCGTCTCTTCGCATGTATG
TTCTTAATGTCCTCCCGCACTCCCGTGCCTCTTTTATCTTTGTTTTACCC
TGTTAGACACCCCTCCTCATCGATTTGGCCTATTTTCCCCTTTTCTCACC
ATCTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGGCCAGGCTGGCCTGGAAC
TCAGAGATCCGCCTGCCTCTGTCTCCTGAGTGTAGGGATTAAAAAAGGTG
TGCGCCACCACCTCCAGCCCGAGATCTCTAGCAAGATAAAGATAGATTTT
TTTTTTTTGCGCAGCTTATCAGTTCCAGAGATTAAAAGTATACATTTTGA
ATTTCAATAATTTTATATGATCTGATTACTATATTTTTGATGAGCATGTG
CCATTACCATGGTTTGTTTTTATATTATAATCTTTGGTATTAACATTCTA
CTCTGATTCTTACTTACGCCCCTCTCCTCCTTTCCCTTTCCCTTTTCCCC
TTTTTCTGTTCTTACCCCCCCCCCCTTTTTCCCTGTTTTTTCTCCCTTCT
TCTTCTTTCTTTCCCAATCCCTTTTCATTTTTTTTTCTATTTCCCCTTCT
TTCCCTTCCCTTTTCCCCCCTTCCCCCCCCACCTCCTTCCTCTCCTCTTT
TTTATTTTTCCCCCTTTTTTCCTTCTCCCTTCTCTTGCCCTTCTTTTTTT
TCCCCTTTTAATTTCTTTTCTTACCCCCTTTCCCCCCCCCCGTTTTCTTC
CCCTTCTCCTCCCTTTCACTTCATCTACTCTTTTTCTTCCATTCCTTTTT
TCCTTCCCTTTTTTTTCCCTCTCCCTTTTCATTAATTCTATTCCCTTCTT
TCTCCCTCCTCCCTTTTTATTTTCTCCGCCTCTCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_a11.b1 MSMg01no144_a11.b1 CHROMAT_FILE:
MSMg01no144_a11.b1 PHD_FILE: MSMg01no144_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:44 2005
         (170 letters)



>mm_chr1_172629202_172629771
          Length = 570

 Score =  302 bits (156), Expect = 9e-87
 Identities = 162/164 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttccatcttctcaggagtggctccttcttcttttttggtctttgtgttgcttca 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttccatcttctcaggagtggctccttcttcttttttggtctttgtgttgcttca 266

                                                                       
Query: 67  ggcttcttcttgggccagccgctatcctttctcaccaacacctcacaccaacccaagcct 126
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 267 ggcttcttcttgggtcagccgctatcctttctcaccaactcctcacaccaacccaagcct 326

                                                       
Query: 127 tctctctccccctctgtttataccatttctagcagtttctctga 170
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctctctccccctctgtttataccatttctagcagtttctctga 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no144_a11.g1 MSMg01no144_a11.g1 CHROMAT_FILE:
MSMg01no144_a11.g1 PHD_FILE: MSMg01no144_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:44 2005
         (196 letters)



>mm_chr1_172768560_172769155
          Length = 596

 Score =  379 bits (196), Expect = e-110
 Identities = 196/196 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtaggccaggctggcctggaactcagagatccgcctgcctctgtctcctgagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 actctgtaggccaggctggcctggaactcagagatccgcctgcctctgtctcctgagtgt 432

                                                                       
Query: 61  agggattaaaaaaggtgtgcgccaccacctccagcccgagatctctagcaagataaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agggattaaaaaaggtgtgcgccaccacctccagcccgagatctctagcaagataaagat 372

                                                                       
Query: 121 agattttttttttttgcgcagcttatcagttccagagattaaaagtatacattttgaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agattttttttttttgcgcagcttatcagttccagagattaaaagtatacattttgaatt 312

                           
Query: 181 tcaataattttatatg 196
           ||||||||||||||||
Sbjct: 311 tcaataattttatatg 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)