BAC Information

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BAC

Clone NameMSMg01-144B16
Chromosome1 (Build37)
Map Location 48,042,936 - 48,043,250
singlet/doubletsinglet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144B16.T7 (MSMg01no144_b16.b1)MSMg01-144B16.TJ (MSMg01no144_b16.g1)
ACCAG348264AG348265
length735754
length of high quality
(start - end)		693 (43 - 735)371 (71 - 441)
definitionCHROMAT_FILE: MSMg01no144_b16.b1 PHD_FILE: MSMg01no144_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:50 2005CHROMAT_FILE: MSMg01no144_b16.g1 PHD_FILE: MSMg01no144_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CCTGATCTTTTCCGACTTTTATCATGAATCAGTGTTGGATCTTGTTGAAT
ACTTTTTCCACATCTAACAAGATGATCATGTGGTCTTTGTCTTTGAATTT
GTTTATATAATGGATTACGTTGATGGATTTCCATATATTAAACCACCCCT
GCATCCCTGGAATAAAACCTACCTGGTCAGGGTGGATAATTGCTTTAATG
TGTTCTTGGATTCTGATGGCTAGAATTTTATTGAGGATTTTTGCATCTAT
ATTTATAAGGGTAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCT
GTGGTTTTGGTATTACAGTAATTGTGGCTTCGTAGAATGAGTTGGGTGGA
GTTTTTTCTACTTCTATTTTGTGGAATAGTTTGTGCAGAACTGGAATTAG
ATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTGGTCCTG
GGCTTTTTTTGGCTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGG
GATATGGGACTGTTTAGATCATTAACTTGATCCTGATTTAAATTTGGTAC
CTGGTATCTGTCTAGGAATTTGTCCATATCATTCTGTTTTTCCAGTTTTG
TTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCA
GGATCTGTTGTTATGTCTCCATTTTCATTTCTGAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATAACCCTTAAAGCTAACTTTCTTAGCTAA
TTTTTTTTTCTGGATTAGGGGTATATCCCTTATGTTAGTTTTAGAAGCCC
ATATTTTTTTTCCAAATAACATTCAGCATTTAAATTGTATTTTGGGGAAT
AGAAATATGGATAACTGGTTAAGAGCATATACATCTCTGGGAGAGGTTCT
GAGTTCATTTGCCATGCCTAGAATTTGACAGTTCATATCTGAATATTACT
CAAAGCACTGAGAATCCACTACTAACTTCTGACATCCTAAGGCACATGGA
ACCACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGA
GAGAGAGAGAGACCCACAGAGAGAGAGAGAGGGAGAGCCTTTCCTTCTCC
CCCTTTTTTCTTCTTCTTCCTTTTTTCCTCTCCTTTCCCCTCCCTTCCCC
TTCCTCTTTCTCTTTCTCTCTCCTTTTTCCCTCTCTCTTCCCTCCTCTCT
CTTTCCCTTTCTCTCCTTTCCTTCCCCCTTCTCTCCCTCTCCTTCTTTCT
TTCCTCTCCCCTCTGCTTCTCGCCCCTTCCTTGCTTTCCCTCTCTTTTCT
TTCCTCTTTTTTTTTCCTTTCCCCTTCTTTTCTTTCTGCTTTCCTCCTTT
CCTCTGTTCCCCTTCCCCCCTTCCTCTTCTTCCTCTCTCTTGTCTTCTTC
TTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_b16.g1 MSMg01no144_b16.g1 CHROMAT_FILE:
MSMg01no144_b16.g1 PHD_FILE: MSMg01no144_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:50 2005
         (371 letters)



>mm_chr1_48042928_48043697
          Length = 770

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataacccttaaagctaactttcttagctaatttttttttctggattaggggtatatccct 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 323 ataacccttaaagctaactttcttagctaa-ttttttttctggattaggggtatatccct 265

                                                                       
Query: 61  tatgttagttttagaagcccatattttttttccaaataacattcagcatttaaattgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 264 tatgttagttttagaagcccatattttttttccaaataacattcagcatttaaattgtag 205

                                                                       
Query: 121 tttggggaatagaaatatggataactggttaagagcatatacatctctgggagaggttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tttggggaatagaaatatggataactggttaagagcatatacatctctgggagaggttct 145

                                                                       
Query: 181 gagttcatttgccatgcctagaatttgacagttcatatctgaatattactcaaagcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gagttcatttgccatgcctagaatttgacagttcatatctgaatattactcaaagcactg 85

                                                                       
Query: 241 agaatccactactaacttctgacatcctaaggcacatggaaccacacacacacacacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  agaatccactactaacttctgacatcctaaggcacatggaaccacacacacacacacaca 25

                           
Query: 301 cacacacacacacaca 316
           ||||||||||||||||
Sbjct: 24  cacacacacacacaca 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 770
Length adjustment: 9
Effective length of query: 362
Effective length of database: 761
Effective search space:   275482
Effective search space used:   275482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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