BAC Information

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BAC

Clone NameMSMg01-144H03
Chromosome1 (Build37)
Map Location 139,432,172 - 139,432,781
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144H03.T7 (MSMg01no144_h03.b1)MSMg01-144H03.TJ (MSMg01no144_h03.g1)
ACCAG348515AG348516
length698709
length of high quality
(start - end)
610 (81 - 690)405 (77 - 481)
definitionCHROMAT_FILE: MSMg01no144_h03.b1 PHD_FILE: MSMg01no144_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:17 2005CHROMAT_FILE: MSMg01no144_h03.g1 PHD_FILE: MSMg01no144_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTNGGGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTAACATTGCCAGTGGGCTATCTCTGGCTCTTTTGC
CTCCTCATGGTACCCCTTTTCTCCTACTGGGTTGCCTCATCTAGTCTTGA
TATGAGGGCTTGTGCCTAGTCTTATTACATCTTATTATGCCATGTTCAGT
TGATATCAATGAGAAGCCTGCTCTTTTCTGAAGAAAAATGGAGGAGCAGT
CGATCTGGGCAACAAGCGAGGCTGGGGATGCAAAGAACAGTGTAGGGAAG
GAAGTTGCTGTTGTGGTGTACTGTATCAGATAAGAATAAATAAAAATATA
CAAAAATTAATTTTCGTGCTTCAATTGCCTTAAATTCCTCTTCCATGCTT
GAGCAGTGATATAAGAGAACAGGCATTCATTTTCTGTATTTAATTCACGC
TTAAGAATGTTCAGTTTTACTCACAGCATACCTTTCAATGCATTTGGAAT
GAGAGCCTTCTCTGGGATTTCCTTTATACATGCACTGATGATTTGCACCC
TTGTTCCCTAGTTTATTAGTGAGAAAGAAAAGACAGAATTCGAGTTGTCA
GGCCACAGCTCTACTCTGCTTCATAAGTGACACAGGTCTCTAATTTTGTA
CCAACACCATTTTAGTGCACTTCAGTTCTGTGATTCTTACAAAGACAG
TTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCT
GAGAAGCACCTGTAAAAATGTTCAACATCCTTAATCATCAGAGAAATTCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGG
TCAAAAATTCAAGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGA
CCACTCCTCCACTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGATGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGATAAT
AAGGACACATGCTCCACTATGTTCAAAACAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCACTCAATAGGGAATGCATACAGAAAAT
GTGGTACATTTACACAATTGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCTTGAGT
GAGGTAACCCAATCACAAAAGAACTCACACAATATGTACTCACTGATAAG
TCGAGATTAGCACAGAAACTTACAATACCTAAGATACCAGATACCATTTG
CAAAACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_h03.b1 MSMg01no144_h03.b1 CHROMAT_FILE:
MSMg01no144_h03.b1 PHD_FILE: MSMg01no144_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:17 2005
         (610 letters)



>mm_chr1_139431972_139432981
          Length = 1010

 Score = 1110 bits (574), Expect = 0.0
 Identities = 601/610 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctatctctggctcttttgcctcctcatggtaccccttttctcctactgggttgcctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctatctctggctcttttgcctcctcatggtaccccttttctcctactgggttgcctcat 260

                                                                       
Query: 61  ctagtcttgatatgagggcttgtgcctagtcttattacatcttattatgccatgttcagt 120
           |||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ctagtcttgatccgagggcttgtgcctagtcttattatatcttattatgccatgttcagt 320

                                                                       
Query: 121 tgatatcaatgagaagcctgctcttttctgaagaaaaatggaggagcagtcgatctgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatatcaatgagaagcctgctcttttctgaagaaaaatggaggagcagtcgatctgggc 380

                                                                       
Query: 181 aacaagcgaggctggggatgcaaagaacagtgtagggaaggaagttgctgttgtggtgta 240
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gacaagcgaggctggggatgcaaagaagagtgtagggaaggaagttgctgttgtggtgta 440

                                                                       
Query: 241 ctgtatcagataagaataaataaaaatatacaaaaattaattttcgtgcttcaattgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtatcagataagaataaataaaaatatacaaaaattaattttcgtgcttcaattgcct 500

                                                                       
Query: 301 taaattcctcttccatgcttgagcagtgatataagagaacaggcattcattttctgtatt 360
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 taaattcctcttccatgcctgagcagtgatataagagagcaggcattcattttctgtatt 560

                                                                       
Query: 361 taattcacgcttaagaatgttcagttttactcacagcatacctttcaatgcatttggaat 420
           ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 taattcaggcttaagaatgttcagttttactcaaagcatacctttcaatgcatttggaat 620

                                                                       
Query: 421 gagagccttctctgggatttcctttatacatgcactgatgatttgcacccttgttcccta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagccttctctgggatttcctttatacatgcactgatgatttgcacccttgttcccta 680

                                                                       
Query: 481 gtttattagtgagaaagaaaagacagaattcgagttgtcaggccacagctctactctgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttattagtgagaaagaaaagacagaattcgagttgtcaggccacagctctactctgct 740

                                                                       
Query: 541 tcataagtgacacaggtctctaattttgtaccaacaccattttagtgcacttcagttctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcataagtgacacaggtctctaattttgtaccaacaccattttagtgcacttcagttctg 800

                     
Query: 601 tgattcttac 610
           ||||||||||
Sbjct: 801 tgattcttac 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)