Query= MSMg01no144_i23.b1 MSMg01no144_i23.b1 CHROMAT_FILE:
MSMg01no144_i23.b1 PHD_FILE: MSMg01no144_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:25 2005
(525 letters)
>mm_chr1_108615080_108616005
Length = 926
Score = 917 bits (474), Expect = 0.0
Identities = 513/526 (97%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 1 ggaattcagttttaatgttccctaggctgtagggatattgcagcaaacaatcttcatgtg 60
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggaattcaattttaatgttgcctaggctgtagggatattgcagcaaacaatcttcatgtg 667
Query: 61 tttgagaggcaccccattaaagacatacggctggtggggatgtcacctcaaaagatgctg 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 666 tttgagaggcaccccattaaagacatacggctggtagggatgtcacctcaaaagatgctg 607
Query: 121 aagttcttggactttggaatagggttggtattggtgtcctcattagccttaaacagaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aagttcttggactttggaatagggttggtattggtgtcctcattagccttaaacagaacg 547
Query: 181 gccaatgaccttataagaataggagaaaaggaagctacacaggaggaatgaatatctgaa 240
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 546 gccaatgaccttaaaagaataggagaaaaggaagctacacaggaagaatgaatatctgaa 487
Query: 241 taggagccgaggtagggaggagtgacagcagaaat-ggagtggggaaacatcagtggcat 299
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 486 taggagccgaggtagggaggagtgacagcagaaatgggagtgggggaacatcagtggcat 427
Query: 300 cagtctgccaccagctaactgagaagagacaaggaaagacttcagccttgaacatccctt 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 426 cagtctgccaccagctaactgagaagagacaaagaaagacttcagccttgaacatccctt 367
Query: 360 gctgcctatgaacttcctccttccatagcacaggagtactctgacctgttctaattcaca 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gctgcctatgaacttcccccttccatagcacaggagtactctgacctgttctaattcaca 307
Query: 420 taccttgtggtgtctggacacaagcatggtaatgttgccgtttaactattttgatttgta 479
||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 306 tactttgtggtgtctggacacaagcatgctaatgttgctgtttaactattttgatttgta 247
Query: 480 gttagtatcaggagacgctgtgaggtctgctaaatagcaaatgagt 525
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 246 gttagtatcaggagacgctgtgaggtctgctaaatagcagatgagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 926
Length adjustment: 10
Effective length of query: 515
Effective length of database: 916
Effective search space: 471740
Effective search space used: 471740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_i23.g1 MSMg01no144_i23.g1 CHROMAT_FILE:
MSMg01no144_i23.g1 PHD_FILE: MSMg01no144_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:25 2005
(611 letters)
>mm_chr1_108516161_108517171
Length = 1011
Score = 977 bits (505), Expect = 0.0
Identities = 584/645 (90%), Gaps = 56/645 (8%)
Strand = Plus / Plus
Query: 1 caggttcagttagagactgtctcaaatagaaaaaaaagaaggaaggagataaaaagacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 189 caggttcagttagagactgtctcaaatagaaaaaaaagaaggaaggagaaaaaaagacaa 248
Query: 61 gaaggctgaaagtgttacagaaagaaccaactctcaacctcaggtgtcttaatggacaca 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 249 gaaggctgaaagtgttacagaaagaaccaactctcaacctcaggtctcttaatggacaca 308
Query: 121 tgcatccaccaccaccactaca--tacacacacacacacacacacacacacacacacaca 178
|||||||||||||||||||||| | |||||||||||||
Sbjct: 309 tgcatccaccaccaccactacatgt----------------------acacacacacaca 346
Query: 179 cacacacacacacctactctctgacacacacacatacacatgtacacctactcctcacat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cacacacacacacctactctctgacacacacacatacacatgtacacctactcctcacat 406
Query: 239 atacatgcatacaaacacagacacacagacacacacacacttctaccctctg-------- 290
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 acacatgcatacaaacacagacacacagacacacacacacttctaccctctgacacacac 466
Query: 291 acacacacacacacacacacacacacacacacatgtacacatacccctcatatacacatg 350
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 467 acacacacacacacacacacacacacacacacatgtacacatacccctcacatacatatg 526
Query: 351 catgcacacatag------------------------acacacacacaccaccccatctc 386
||||||||||||| |||||||||||||||||||||||
Sbjct: 527 catgcacacatagacacacacacacagagacacacacacacacacacaccaccccatctc 586
Query: 387 atttaaaaggaaaaaactggatcatcataaaccacttaaatgactctataagtagtatta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 atttaaaaggaaaaaactggatcatcataaaccacttaaatgactctataagtagtatta 646
Query: 447 ccatatatggtaaaagagaaaaataaaaacaacatacaaagattttgtggttttcccaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ccatatatggtaaaagagaaaaataaaaacaacatacaaagattttgtggttttcccaaa 706
Query: 507 atgtcacaatgatttcaggcacagcaaccatcacttccaagtgactggacaaccagccaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 atgtcacaatgatttcaggcacagcaaccatcacttccaagtgactggacaaccagccaa 766
Query: 567 gagctagtggctgtttaactgttcctgcctgtgatgtggtaagaa 611
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gagctagtggctgtttaactgttcctgcctgtgatgtggtaagaa 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 194
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
