Query= MSMg01no144_j19.b1 MSMg01no144_j19.b1 CHROMAT_FILE:
MSMg01no144_j19.b1 PHD_FILE: MSMg01no144_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:29 2005
(573 letters)
>mm_chr1_45949768_45950740
Length = 973
Score = 977 bits (505), Expect = 0.0
Identities = 556/573 (97%)
Strand = Plus / Minus
Query: 1 gtctgagtggcaacttcggagtgtggagtctttatggccttatttgattgtcacagaaat 60
||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gtctgagtgtcgactttggagtgtggagtctttatggccttatttgattgtcacagaaat 714
Query: 61 cttcttaggaaggaaacactactgtcagtatctttcatcagctgctcacataatagggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cttcttaggaaggaaacactactgtcagtatctttcatcagctgctcacataatagggat 654
Query: 121 aaggttggagtctgagcctaggtattgctcacatagtaggggtggggttcaagtctgagc 180
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 653 agggttggagtctgagcctaggtattgcccacatagtaggggtggggttcaagtctgagc 594
Query: 181 ccagttattgctcacttagtagatagagatggagttggtgtgtgagcctagatgttgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 593 ccagttattgctcacttagtagatagagatggagttggtgtgtgagcctagatgttgctc 534
Query: 241 acttagtatgtatgtggttggctcttgagtctaggtatctgccaccagggctctgcttct 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acttagtagggatgtggttggctcttgagtctaggtatctgccaccagggctctgcttct 474
Query: 301 gaaccacagagcaagtctgaacatcccaaactagcttaacagccacccactaaaaacagc 360
|||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 473 gaaccacagagcaaatctgaacatcccaaactagcttaacagctattcactaaaaacagc 414
Query: 361 catgaccctgagggtgtgtcgtgtcacagacagacacggttcttttatctcgtagtggct 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cacgaccctgagggtgtgtcgtgtcacagacagacacggttcttttatctcgtagtggct 354
Query: 421 ttgttttattcagttcgatccacaaatcagttggatccagaaaatgttacctaaatataa 480
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 353 ttgttttattcagttcgatccacaaatcagttggatccagaaaatgctacctaaatctaa 294
Query: 481 tagaccttctctgcaaagaacactgatctgatgaggcagtttgaatacattgtaagctat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tagaccttctctgcaaagaacactgatctgatgaggcagtttgaatacattgtaagctat 234
Query: 541 ccagagcagggtgggtgagatgcctcagcaggt 573
|||||||||||| ||||||||| ||||||||||
Sbjct: 233 ccagagcagggtaggtgagatgtctcagcaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_j19.g1 MSMg01no144_j19.g1 CHROMAT_FILE:
MSMg01no144_j19.g1 PHD_FILE: MSMg01no144_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:29 2005
(663 letters)
>mm_chr1_45777587_45778648
Length = 1062
Score = 1259 bits (651), Expect = 0.0
Identities = 660/663 (99%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 1 agtggagaagcattatttaaaaagaaaaaaaaatagttttgtgactgtgtctgctaacat 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggagaagcattatttaaaaag-aaaaaaaatagttttgtgactgtgtctgctaacat 259
Query: 61 gttaacaaagttcgaagttagctagcagaggacagagccattgaaagaaatctccagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttaacaaagttcgaagttagctagcagaggacagagccattgaaagaaatctccagcct 319
Query: 121 tctgggaaaattttagctcaacccctggctcctcctcttcttgttctccacaggaatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctgggaaaattttagctcaacccctggctcctcctcttcttgttctccacaggaatgct 379
Query: 181 tttctcctgggcacacatggagacttctcaaaaatgcctttccacggtgtggaagaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttctcctgggcacacatggagacttctcaaaaatgcctttccacggtgtggaagaaaat 439
Query: 241 actgcctcccagctactggagagtgctatgcctcctcactcattggttctcttgttgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 actgcctcccagctactggagagtgctatgcctcctcactcattggttctcttgttgact 499
Query: 301 acttttacacagaaaatttatactgatttctatgcaacgctaagcaacactgacatttga 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 acttttacacagaaaatttatactgatttctatgcaacgctaagcaatactgacatttga 559
Query: 361 ttacccagtgagaacttgcattttaccttttgtttctctttatacacttacccctctgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttacccagtgagaacttgcattttaccttttgtttctctttatacacttacccctctgtc 619
Query: 421 acctgataataagaaaggacttgcttattctatcatcttgcacattgcttccttcatggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acctgataataagaaaggacttgcttattctatcatcttgcacattgcttccttcatggt 679
Query: 481 taatcctatagaagatttgtgatgtggcttctaagctaagtcatttaattggctttttca 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taatcctatataagatttgtgatgtggcttctaagctaagtcatttaattggctttttca 739
Query: 541 aacacatcctttgtgcttttgaaacaagatagaatatggttgcatcgtagtgaatcaaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacacatcctttgtgcttttgaaacaagatagaatatggttgcatcgtagtgaatcaaga 799
Query: 601 cccgtttcccaacacatacaaataaggacagcaagccatgcagctgtgacttctctgtct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cccgtttcccaacacatacaaataaggacagcaagccatgcagctgtgacttctctgtct 859
Query: 661 agc 663
|||
Sbjct: 860 agc 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space: 686956
Effective search space used: 686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
