NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCCAGTTTGCTGTCCGTTGAAGTCTCTTAAAATGCTAAAAGACT
ATTAGCTTTATCTGTAGAATGTTATGCTACCAAGGCTGTAGAGACTGGCA
GTGTGGAACTGTGTGTCTGTTCCCTCACCACCCACAACCCACAGGATTGG
AGTCATTTATTAGGCATGGCAACTAGGTTCCACACTTGCAAACTTTTTAT
TGCCTTCCAGGTTAGAAACAGCTGCTAATTTCCTGGTAGGGCAATATCTC
AAGGCTTATAGAGCAGGACAAATATGTAGTCTCCTAAAGCTATTCTTGAG
ATGCACAGAAATTTTCTGAGGCAAAATTCTCTCCTTGTACTCAGGCAAAG
AAGCTTAGAGCAGAGGTAAGGCCCAAAGAGTTCAACCATTTGGTGTAACC
ACTCGGGACCCATGTAACTGTTCTCTGTTCAGGTGGCAGGCTTGCAGGTG
TAAGTTCCTCATAGCTGCATCTGAATACCATCCTAAAGGGCTTACTTTAA
CATTTAGAATGCCCTGCAATGGAAGTTGTAAGTTGTGTGATGTTAGCGCC
AAACAATTCTGAAGGTTTCTTGAAAGGCTCATTATTCGCGAAGACATTTA
ATCATGCATAGTTGACTGTCAAGTTCTTTGAAAATTGTCAGTCTAAGGTA
CTTTGCTTTCCTCAAGTTGATTC

NNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCAGCATCTAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGA
ATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAA
GTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAG
TGGCTTTATAAAATGAGTCGCCCAGAGTACCTTCTACTTCTATCCTGTGA
AAAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAA
CTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTAT
TTATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTCAGAACGACA
ACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGCC
CATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTACAACG
ATCTGATGTCGCTTTGTA

Query= MSMg01no144_n24.b1 MSMg01no144_n24.b1 CHROMAT_FILE:
MSMg01no144_n24.b1 PHD_FILE: MSMg01no144_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:49 2005
         (554 letters)



>mm_chr1_114745906_114746859
          Length = 954

 Score =  971 bits (502), Expect = 0.0
 Identities = 535/546 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccagtttgctgtccgttgaagtctcttaaaatgctaaaagactattagctttatc 65
           |||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gaattccagtctgctgtaagttgaagtctcttaaaatgctaaaagactattagctttatc 692

                                                                       
Query: 66  tgtagaatgttatgctaccaaggctgtagagactggcagtgtggaactgtgtgtctgttc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgtagaatgttatgctaccaaggctgtagagactggcagtgtggaactgtgtgtctgttc 632

                                                                       
Query: 126 cctcaccacccacaacccacaggattggagtcatttattaggcatggcaactaggttcca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cctcaccacccacaacccacaggattggagtcatttattaggcatggcaactaggttcca 572

                                                                       
Query: 186 cacttgcaaactttttattgccttccaggttagaaacagctgctaatttcctggtagggc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cacttgcaaactttttattgccttccaggttagaaacagctgctaatttcctggtagggc 512

                                                                       
Query: 246 aatatctcaaggcttatagagcaggacaaatatgtagtctcctaaagctattcttgagat 305
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 511 tatatctcaaggcttatagagcaggacaaatatgtagtctcttaaagctattcttgagat 452

                                                                       
Query: 306 gcacagaaattttctgaggcaaaattctctccttgtactcaggcaaagaagcttagagca 365
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 451 gcacagaaattttctgaggcaaaattctctccttgtaatcaggcaaagaagcttagagca 392

                                                                       
Query: 366 gaggtaaggcccaaagagttcaaccatttggtgtaaccactcgggacccatgtaactgtt 425
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaggtaaggcagaaagagttcaaccatttggtgtaaccactcgggacccatgtaactgtt 332

                                                                       
Query: 426 ctctgttcaggtggcaggcttgcaggtgtaagttcctcatagctgcatctgaataccatc 485
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 331 ctctgttcaggtggcaggcttgcaggtgtaagttcctcgtagctgcatccgaataccatc 272

                                                                       
Query: 486 ctaaagggcttactttaacatttagaatgccctgcaatggaagttgtaagttgtgtgatg 545
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctaaagagcttactttaacatttagaatgccctgcaatggaagttgtaagttgtgtgatg 212

                 
Query: 546 ttagcg 551
           ||||||
Sbjct: 211 ttagcg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)