Query= MSMg01no145_a19.b1 MSMg01no145_a19.b1 CHROMAT_FILE:
MSMg01no145_a19.b1 PHD_FILE: MSMg01no145_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:02 2005
(654 letters)
>mm_chr1_13009457_13010507
Length = 1051
Score = 1089 bits (563), Expect = 0.0
Identities = 630/653 (96%), Gaps = 5/653 (0%)
Strand = Plus / Plus
Query: 3 gaattcctgctttctctccacttgatgacagactggtagcctgtaagccaaataaacctt 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcctgctttcccttcacttgatgacagactggtagcctgtaagccaaataaacctt 262
Query: 63 ttcctccctaagctggttttggtcagtgtgttgtcatagcaacaacaacaacaacaacaa 122
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 263 ttcctccccaagctggttttggtcagtgtgttgtcatagtaacaacaacaacaacaacaa 322
Query: 123 accaaacccccaaaccctagcacagcacctaagcagagacccagggcagcagatggtacc 182
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 323 accaaacccccaaactctagcacagcacctaagcagagacccagggcagcagacggaacc 382
Query: 183 agcccgacactatggggagaagggtgagcattttgtcactcactggcacactgtccatcc 242
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 383 agccagacactatggggagaagggtgagcattttgtcactcactggcacactgcccaccc 442
Query: 243 tccctgaactatggaagaaatgcctcaagggcattagagagcagtaagatgcatacttca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tccctgaactatggaagaaatgcctcaagggcattagagagcagtaagatgcatacttca 502
Query: 303 ggggtcagtttaaacaaacgatgttactagacgtcacatggaagccagtttgtgatctcc 362
|||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 503 ggggtcagtttagacaagcgatgttactagacgtcacatgggagccagtttgtgatc-cc 561
Query: 363 tgtggcccttactc-gtagctttactctctttcaataactctccatcaatctttgtattt 421
|||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 562 tgtggc--ttac-ctgtagctttactctctttcaataactctccatcaatgtttgtattt 618
Query: 422 ccagaaagaatgtcattatgtagcctggctgtcctggaagtcactctgcagatcaggctg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccagaaagaatgtcattatgtagcctggctgtcctggaagtcactctgcagatcaggctg 678
Query: 482 gccatgaactcagaaatccacctgcctctgccctctgagtgatgaatgaaagtcgtgagc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gccatgaactcagaaatccacctgcctctgccctctgagtgatgaatgaaagtcgtgagc 738
Query: 542 caccacacctggctatctcaatcaatcttgatccagaaatgttaattagaaaattaaaga 601
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 739 caccacacctggctgtctcaatcaatcttgatccaaaaatgttaattagaaaattaaaga 798
Query: 602 gacaaacaatttatatattttaaatagttgaacacactgatgtacatctttaa 654
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 799 gataaacaatttatatattttaaatagttgaacacagtgatgtacatctttaa 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1051
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1041
Effective search space: 670404
Effective search space used: 670404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_a19.g1 MSMg01no145_a19.g1 CHROMAT_FILE:
MSMg01no145_a19.g1 PHD_FILE: MSMg01no145_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:02 2005
(547 letters)
>mm_chr1_13223594_13224540
Length = 947
Score = 607 bits (314), Expect = e-178
Identities = 317/318 (99%)
Strand = Plus / Minus
Query: 1 actatgctgttaactcgaaacaaagagactggaaaataggaactggttaaatatttatgg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 318 actatgctgttaactcgaaacaaagaaactggaaaataggaactggttaaatatttatgg 259
Query: 61 tttactcgtatgagaaattatagagccattaaaagttattctttatttgcatggtggtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttactcgtatgagaaattatagagccattaaaagttattctttatttgcatggtggtgc 199
Query: 121 cgtggtggcacatgcctttaattgaagcattcaagaagcagagccaggcagatctctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 cgtggtggcacatgcctttaattgaagcattcaagaagcagagccaggcagatctctgtg 139
Query: 181 tttgaggccagcctggtctacagagtgagttccacaacagccagggctacacagagaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tttgaggccagcctggtctacagagtgagttccacaacagccagggctacacagagaaat 79
Query: 241 tctgtctcaaaaccaaagaaaacaaatttaaacatttttaaaatgctcatacagataaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tctgtctcaaaaccaaagaaaacaaatttaaacatttttaaaatgctcatacagataaaa 19
Query: 301 cttagtggcctaatattc 318
||||||||||||||||||
Sbjct: 18 cttagtggcctaatattc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
