BAC Information

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BAC

Clone NameMSMg01-145C05
Chromosome1 (Build37)
Map Location 65,900,799 - 65,901,345
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145C05.T7 (MSMg01no145_c05.b1)MSMg01-145C05.TJ (MSMg01no145_c05.g1)
ACCAG349018AG349019
length704707
length of high quality
(start - end)
547 (75 - 621)618 (78 - 695)
definitionCHROMAT_FILE: MSMg01no145_c05.b1 PHD_FILE: MSMg01no145_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:09 2005CHROMAT_FILE: MSMg01no145_c05.g1 PHD_FILE: MSMg01no145_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGAACGAGACCG
CGGAATTCTACTAATTACAGCACTATTAATGCTTAGATCAGTTTATTGAG
CATGAAATTATAGATAATTATTAATCATGAACCACTTGTATCTTTATTTG
TGCGTTCTACAGATTTATGCTAATTTCAGGACCCTTCGGAATATTAGGCT
CTTTTTTCGAACTGCGGAGTATTGATAGGTATTTGTTTATTGTCATAATT
AGCACAATTTAGAATAGCACCCCATTTTCTTTTTTCTTTCTTTCTTTATT
ATTTTATTATTAACTTTACATCTTTTTCACAGCCCAGTCCCACCCTATCT
CTACTGTTTTCCTATCTGCCGCCTCCCCATAACAACCTGCCTCAAGTTGA
ATGAAGACTAAGCTCATCCCCTCACTGAGGTCAGAAAAGGCAGCCCAGCT
GGGAAAAAGGATCCAAAGGCAACAGTGTATGAGCCAGAGACCCATTCCCT
CACCCCACCCCACCCTTAGTCCAGTTGTTAGGGGACCCACATGAAGACCC
AGCTGCACATGTGCTACATATGATTAGAGTGCAGGCTTTTGAAATAAGAC
CTAATGATTCTTTGGATTTCCTCAATGTTTGTTATTTTGCCCCTTTTCAT
TTCTGATTTGTTAATTTTTGATACTGTCTTTTTGTTAGATTGGCTAACGG
TTTG
NNNCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
TGAGAAGCACCTGAAAATATGTTCAGCATCCTTAATCATCAGAGAAATGC
AAATGAAAACAACCCTGAGATTCCATCTCATACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAAGCTTTTACAACCACTCTGAA
ATCAGTCTGGCGGTTTCTCAGAAAATTGGACATAGTACTACCGGCAGATC
CTGCACTACCTCTCCTGGGCATATATCCAGAAGATGCCTCAACTGGGAAA
AAGACACATGCTCCACTATGTTCATAGCAGCCTTATGTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATCCGAAAAAT
GTGGTACATTTACAGAATGGAGTACTACTCAGTTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGATTGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACAATCACAAAAGAACTCAAATGATATGTACCCACTGATAAG
TGGATATTAGCCCAGACACTTAGTATACCTGAGATATAAGATACAATTTT
CAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_c05.b1 MSMg01no145_c05.b1 CHROMAT_FILE:
MSMg01no145_c05.b1 PHD_FILE: MSMg01no145_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:09 2005
         (547 letters)



>mm_chr1_65900599_65901545
          Length = 947

 Score =  998 bits (516), Expect = 0.0
 Identities = 539/552 (97%), Gaps = 10/552 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaatgcttagatcagtttattgagcatgaaattatagataattattaatcatgaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaatgcttagatcagtttattgagcatgaaattatagataattattaatcatgaacca 260

                                                                       
Query: 61  cttgtatctttatttgtgcgttctacagatttatgctaatttcaggacccttcggaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtatctttatttgtgcgttctacagatttatgctaatttcaggacccttcggaatat 320

                                                                       
Query: 121 taggctcttttttcgaactgcggagtattgataggtatttgtttattgtcataattagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggctcttttttcgaactgcggagtattgataggtatttgtttattgtcataattagca 380

                                                                       
Query: 181 caatttagaatagcaccccattttcttttttctttctttctttattattttattattaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatttagaatagcaccccattttcttttttctttctttctttattattttattattaac 440

                                                                       
Query: 241 tttacatctttttc-----acagcccagtcccaccctatctctactgttttcctatctgc 295
           ||||||||     |     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttacatc-----ccaagcacagcccagtcccaccctatctctactgttttcctatctgc 495

                                                                       
Query: 296 cgcctccccataacaacctgcctcaagttgaatgaagactaagctcatcccctcactgag 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||
Sbjct: 496 cgcctccccataacaacctgcctcaagttgaatgaagactaagctcatccttttactgag 555

                                                                       
Query: 356 gtcagaaaaggcagcccagctgggaaaaaggatccaaaggcaacagtgtatgagccagag 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtcagaaaaggcagcccagctgggaaaaaggatccaaaggcaacagtgtatgagccagag 615

                                                                       
Query: 416 acccattccctcaccccaccccacccttagtccagttgttaggggacccacatgaagacc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acccattccctcaccccaccccacccttagtccagttgttaggggacccacatgaagacc 675

                                                                       
Query: 476 cagctgcacatgtgctacatatgattagagtgcaggcttttgaaataagacctaatgatt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cagctgcacatgtgctacatatgattagagtgcaggcttttgaaataagacctaatgatt 735

                       
Query: 536 ctttggatttcc 547
           ||||||||||||
Sbjct: 736 ctttggatttcc 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)