Query= MSMg01no145_e11.b1 MSMg01no145_e11.b1 CHROMAT_FILE:
MSMg01no145_e11.b1 PHD_FILE: MSMg01no145_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:19 2005
(602 letters)
>mm_chr1_40368944_40369945
Length = 1002
Score = 1083 bits (560), Expect = 0.0
Identities = 589/602 (97%), Gaps = 7/602 (1%)
Strand = Plus / Minus
Query: 5 gaattcaacactttcc----atgctcttcccagactcctttttatgtctcctgttgcttc 60
|||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct: 819 gaattcaacact---caaagatgctcttcccagactcctttttatgtcccctgttgcttc 763
Query: 61 ttccttgccttacttgagattcaaagacaattaaaatttacagaccagctcaaaaactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttccttgccttacttgagattcaaagacaattaaaatttacagaccagctcaaaaactga 703
Query: 121 cccacgaaagacggactttgctcttagaacctggaaaactctcagccaaaatattttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 702 cccacgaaagacggactttgctcttagaacctggaaaactctcagccaaaaaattttaaa 643
Query: 181 cttcttgttaggttgattgatctataatactcctagtctattaaagcagttgcatatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cttcttgttaggttgattgatctataatactcctagtctattaaagcagttgcatatgat 583
Query: 241 tagatctaactagtcattacattccagaatactaaaagtcaattaaacattggcccaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tagatctaactagtcattacattccagaatactaaaagtcaattaaacattggcccaaca 523
Query: 301 tgactaagggaaagttaataagtcttcagtcttccaatatgtacaatggtgccaaccttc 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgactaagggaaagttaataattcttcagtcttccaatatgtacaatggtgccaaccttc 463
Query: 361 cagaatcacaacccaccaactaacttcacaagaaacatttacataccttctccaacatag 420
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cagaatcagaactcagcaactaacttcacaagaaacatttacataccttctccaacatag 403
Query: 421 tcatcccttccataaatgaacagcttgtatccaaactgtccctccaagacctcaggcaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcatcccttccataaatgaacagcttgtatccaaactgtccctccaagacctcaggcaac 343
Query: 481 agtttaaaaacaaaagtatctaagtctgagaaggacccctctcccagggtcttgggataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agtttaaaaacaaaagtatctaagtctgagaaggacccctctcccagggtcttgggataa 283
Query: 541 agaatataggcatcgtatgtctttccatctgaagctaaaagggaaataaaatacatttag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agaatataggcatcgtatgtctttccatctgaagctaaaagggaaataaaatacatttag 223
Query: 601 ag 602
||
Sbjct: 222 ag 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_e11.g1 MSMg01no145_e11.g1 CHROMAT_FILE:
MSMg01no145_e11.g1 PHD_FILE: MSMg01no145_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:19 2005
(511 letters)
>mm_chr1_40187117_40188030
Length = 914
Score = 841 bits (435), Expect = 0.0
Identities = 493/517 (95%), Gaps = 9/517 (1%)
Strand = Plus / Plus
Query: 1 taagcagcttatatctgtgtcaaagataaagcatgatgagctaagtaaattaaaagaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagcagcttatatctgtgtcaaagataaagcatgatgagctaagtaaattaaaagaaaa 260
Query: 61 aaaaggagctgttatctttctagaagacacacagaattatttaagggagcattttaggtg 120
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aaaaggagctgttatttttctagaagacacacaggattatttaagggagcattttaggtg 320
Query: 121 gaagaataaaagaaataagattgtccatgtgttgacaatttttgtcaccagtgacagttt 180
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 321 gaagaataaaagaaataagattgttcatgtgttgacaatttttgttaccagtgacagttt 380
Query: 181 ccctgggcttctgtatgccatatagtctattcttgtatgtgcttgaaattttccatatgg 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 381 ccctgggcttctgtatgccatatagtctattcttgtatgtgcttgaaaatttccagatgg 440
Query: 241 gattataaaatacaaggcagaaccaagccagatgtctactaggcaagagatgtgtatgtg 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaataaaatacaaggcagaaccaagccagatgtctactaggcaagagatgtgtatgtg 500
Query: 301 aaactgctgtacagaacacggcgggcatacatagtggaagaacacccaaa------tcat 354
||||||||||||||||||||| |||||||||||||||||||| | ||| ||||
Sbjct: 501 aaactgctgtacagaacacggtgggcatacatagtggaagaata---aaaaaaaagtcat 557
Query: 355 tgtaataaatggcatggaacagtatcatgagtcttagaagtatataaatgagtgaagtca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgtaataaatggcatggaacagtatcatgagtcttagaagtatataaatgagtgaagtca 617
Query: 415 ggaagcatttagtcttggcattctgcccttctagggagagtgggaaagatgacattggac 474
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggaagcatttagtcttggcattttgcccttctagggagagtgggaaagatgacattggac 677
Query: 475 aactatgctccctctctaatttctttctctgtataca 511
||| ||| |||| ||||| ||||||||||||||||||
Sbjct: 678 aacaatgttccccctctactttctttctctgtataca 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 914
Length adjustment: 10
Effective length of query: 501
Effective length of database: 904
Effective search space: 452904
Effective search space used: 452904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
