BAC Information

Click to search

BAC

Clone NameMSMg01-145G11
Chromosome1 (Build37)
Map Location 151,677,166 - 151,677,462
singlet/doubletsinglet
Overlap genePla2g4a
Upstream geneLOC100042792, LOC435647, LOC100042813
Downstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145G11.T7 (MSMg01no145_g11.b1)MSMg01-145G11.TJ (MSMg01no145_g11.g1)
ACCAG349217AG349218
length710738
length of high quality
(start - end)
572 (46 - 617)299 (75 - 373)
definitionCHROMAT_FILE: MSMg01no145_g11.b1 PHD_FILE: MSMg01no145_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:28 2005CHROMAT_FILE: MSMg01no145_g11.g1 PHD_FILE: MSMg01no145_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGA
ATTCTCAACTGAGGCAAACCGAAGGGCTGAGAAGCACTTGAAAAAAATGT
TCAATATCCTTAATCACCAGGGAAATACAAACCAAAATAACCCAGAGATT
CCACCTCATACCAGTCAGAATGGTTAAGATCAAAAATTCATGTGACAACA
GATGCTGGTGAGGATGTGGAGAAAGGGGAACACTCCACCATTGCTGGTGG
GATTGCAAGGTTGTACAACCACTGTAAAAATCAGTCTGGCAGTTCCTCAG
AAAATTGGACATAGTACTACTGTATGATCCAGCAATACCTCTCCTGGGCA
TATACCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATCCACACACAGCGAGAAGCTGGAAAGAACCCAAAT
GTCCCTTAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAACAATGAATTTATGAAATTCTTGGGCAAA
TGGATATATCTGGAGGATATCATCCTGAGTGAGGTAACCCATTCAGAAAA
GAAGTCACTTGATATGCACTCACTGACAAGTGGTTGTTAGCCCAGAAACT
TATAATACCCAAGATACTATTTGCAAAACACTAGAAATATCAAGAAGAAG
GAAGACCACC
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGTGGCTTGATCATCCCAGCACAGA
AATTACACAGTGGGTTTACTTAGAAACTCCTTATTGAAGAATTTTCTTGC
TTCAACATTACTGAGGGAAACAGAGCAACGAGATGGGTTCTGTCTTCTGT
ATTCAATGCTCTCAACAATGGCATCCTTTATCACCTGCCAAAAGACACAG
AAAATTAATGATGAGCACAGCTATAAATCTCTGAAACATTCGTTGGTTGA
AAACAAAAGCCTCGTTTCTTTCTGTCTTTTATTTTCTTTGCAAGTGTGTG
TGTGTGTGGTGTATGTGTGGCGTCTCCCTTCCTTTTACTCTTCCTCACTT
TCTTCTTTGGCGTGGCCCCCCCCCGTTTTTTTTATCCTTCTTTATTTTCA
TTCCTCCTTTTTTCTTTCTGTGCTCGGTTTCTTACTTTCTTTCTCTTATT
TCTATTACATCTTTTTTTTTATTTTAACGCATATTTTTTTTCTTTTTTCA
CTCTTTCTCATATTCTTTTTTAACCATTTGCAACTAATAATATATCACCA
TTACCTCCACTACTCCTTTATAACCTTTTATCCTATTACATTTTTACGCA
GTTCTTATTTCTTCTTTACCTCCTTTTTTATATTCATTCTTCCCTAACTT
CCATATTATTACTTTTATTTCCTCTCTCTCTCTCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_g11.g1 MSMg01no145_g11.g1 CHROMAT_FILE:
MSMg01no145_g11.g1 PHD_FILE: MSMg01no145_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:29 2005
         (299 letters)



>mm_chr1_151676963_151677661
          Length = 699

 Score =  555 bits (287), Expect = e-162
 Identities = 293/297 (98%), Gaps = 4/297 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   tggcttgatcatcccagcacagaaattacacagtgggtttacttagaaactccttattga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tggcttgatcatcccagcacagaaattacacagtgggtttacttagaaactccttattga 263

                                                                       
Query: 64  agaattttcttgcttcaacattactgagggaaacagagcaacgagatgggttctgtcttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaattttcttgcttcaacattactgagggaaacagagcaacgagatgggttctgtcttc 323

                                                                       
Query: 124 tgtattcaatgctctcaacaatggcatcctttatcacctgccaaaagacacagaaaatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtattcaatgctctcaacaatggcatcctttatcacctgccaaaagacacagaaaatta 383

                                                                       
Query: 184 atgatgagcacagctataaatctctgaaacattcgttggttgaaaacaaaagcctcgttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgatgagcacagctataaatctctgaaacattcgttggttgaaaacaaaagcctcgttt 443

                                                                    
Query: 244 ctttctgtcttttattttctttgcaagtgtgtgtgtgtgtg----gtgtatgtgtgg 296
           |||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 444 ctttctgtcttttattttctttgcaagtgtgtgtgtgtgtgtgtggtgtatgtgtgg 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)