Query= MSMg01no145_n08.b1 MSMg01no145_n08.b1 CHROMAT_FILE:
MSMg01no145_n08.b1 PHD_FILE: MSMg01no145_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:02 2005
(584 letters)
>mm_chr1_20041115_20042098
Length = 984
Score = 571 bits (295), Expect = e-167
Identities = 301/303 (99%), Gaps = 1/303 (0%)
Strand = Plus / Minus
Query: 282 gggcatatacccaaaagatgttccaacttgtaataaggaaacatgcttcactatattcgt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 gggcatatacccaaaagatgttccaacttgtaataaggaaacatgcttcactatattcgt 925
Query: 342 agcagccttatttataataggtagaagctggaaagaacccagatgtccctcaataaagga 401
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 924 agcagccttatttataatagctagaagctggaaagaacccagatgtccctcaat-aagga 866
Query: 402 atggatacagtaaatgtggtacataatggagtactactcagcaattaaaacaatgaattc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 atggatacagtaaatgtggtacataatggagtactactcagcaattaaaacaatgaattc 806
Query: 462 atgaactcttaggcaaatgaaggcatccatctctattcaaacaaaagaatacttaagtgc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atgaactcttaggcaaatgaaggcatccatctctattcaaacaaaagaatacttaagtgc 746
Query: 522 actgaattatcacatttgtctgcctcccacaaagccttatgacatgagaatatgaagcaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actgaattatcacatttgtctgcctcccacaaagccttatgacatgagaatatgaagcaa 686
Query: 582 agt 584
|||
Sbjct: 685 agt 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_n08.g1 MSMg01no145_n08.g1 CHROMAT_FILE:
MSMg01no145_n08.g1 PHD_FILE: MSMg01no145_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:02 2005
(509 letters)
>mm_chr1_19887295_19888204
Length = 910
Score = 949 bits (491), Expect = 0.0
Identities = 503/507 (99%), Gaps = 1/507 (0%)
Strand = Plus / Plus
Query: 1 agatacccaataagcaacattaagtctaatgttttgaagcatgacggagtgtacagaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatacccaataagcaacattaagtctaatgttttgaagcatgacggagtgtacagaaga 260
Query: 61 cctcaagatgc-tccacatctcattgaggtgagaactcatcttatgcttgcatcatttaa 119
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cctcaagatgcttccacatctcattgaggcgagaactcatcttatgcttgcatcatttaa 320
Query: 120 ttgagtgaacaaactttgaggtctataatttatctcacaaaaagattaccaataaatttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagtgaacaaactttgaggtctataatttatctcacaaaaagattaccaataaatttt 380
Query: 180 gatctcagtgaaacaaaacacatataattgcaggcatgggagtaaaaccaagaaattagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctcagtgaaacaaaacacatataattgcaggcatgggagtaaaaccaagaaattagc 440
Query: 240 atacctattttcttagagtgaacatcttatgagatgagtatgatgatatgagtttacatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacctattttcttagagtgaacatcttatgagatgagtatgatgatatgagtttacatc 500
Query: 300 atacagtgtcaggaagaaagaaacccagtataagcttataactgcaagctgaatccctac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacagtgtcaggaagaaagaaacccagtataagcttataactgcaagctgaatccctac 560
Query: 360 ttatgatcctgtaagggattctttgcactgtcagcttgcattactctgagaagtaaaatt 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 ttatgatcctgtaagggattctttgcactgccagcttgcattactctgagaagtaaaatt 620
Query: 420 cttattcacaccttaaagatgaggatagacagcctcagtgagacgaagcaacatgttaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 cttattcacaccttaaagatgaggatagacagcctcagtgagacgaagcaacatgttgaa 680
Query: 480 gtgtcgcaggctgcttgatttcttaaa 506
|||||||||||||||||||||||||||
Sbjct: 681 gtgtcgcaggctgcttgatttcttaaa 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space: 449100
Effective search space used: 449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
