Query= MSMg01no145_p01.b1 MSMg01no145_p01.b1 CHROMAT_FILE:
MSMg01no145_p01.b1 PHD_FILE: MSMg01no145_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:10 2005
(659 letters)
>mm_chr1_47484154_47485212
Length = 1059
Score = 1197 bits (619), Expect = 0.0
Identities = 646/655 (98%), Gaps = 1/655 (0%)
Strand = Plus / Plus
Query: 5 gaattcctaaacctggcaaacagcttcagtgaagtagcgggatataaaattaacccaaac 64
|||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 206 gaattcttaaacctggtaaacagcttcagtgaagtagcgggttataaaattaacccaaac 265
Query: 65 aagtcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattagggaaaca 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggtcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattagggaaaca 325
Query: 125 acacccttctcaatagtcacaaataatataaaataccttggcgtgactctaagtaagtga 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 326 acacccttctcaatagtcacaaataatataaaataccttggcatgactctaagtaagtga 385
Query: 185 aagatctgtatgataagaacttcaagtccctgaagaaagaaattaaagaagatctcagaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 386 aagatctgtatgataagaacttcaagtccctgaagaaagaaattaaagaagatctcagga 445
Query: 245 gatggaaagatctcccatgctcatggatcggcaggatcaatatagtaaaaatggctatct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gatggaaagatctcccatgctcatggatcggcaggatcaatatagtaaaaatggctatct 505
Query: 305 tgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttca 565
Query: 365 acgaattagaaagggcaatctgcagattcatctggaataacaaaaaacctaggatagcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acgaattagaaagggcaatctgcagattcatctggaataacaaaaaacctaggatagcaa 625
Query: 425 aacgtcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctgt 484
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaagtcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctgt 685
Query: 485 actacagagcaattgtgattaaaaactgcatggtactggtgaaaaatttttaacagtcct 544
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 686 actacagagcaattgtgattaaaa-ctgcatggtactggtgaaaaatttttaacaatcct 744
Query: 545 actataatttatgccaattgaatctggatatttaagatgctaatgagatgtaccatgttc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actataatttatgccaattgaatctggatatttaagatgctaatgagatgtaccatgttc 804
Query: 605 gaagttatatgttgaacaactacatgtaagagagcacatggaaataatctaatag 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaagttatatgttgaacaactacatgtaagagagcacatggaaataatctaatag 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_p01.g1 MSMg01no145_p01.g1 CHROMAT_FILE:
MSMg01no145_p01.g1 PHD_FILE: MSMg01no145_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:10 2005
(192 letters)
>mm_chr1_47530317_47530908
Length = 592
Score = 348 bits (180), Expect = e-100
Identities = 189/192 (98%)
Strand = Plus / Minus
Query: 1 ctgtgaaatggagaacaatcatagtgaccactgtggtataccattacaatttcttgtaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgtgaaatggagaacaatcatagtgaccactgtggtataccattacaatttcttgtaac 333
Query: 61 tactggtaatagtgcttagcagagcaagctttaagcatttgacttgttcttcctcaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tactggtaatagtgcttagcagagcaagctttaagcatttgacttgttcttcctcaggaa 273
Query: 121 tagcttgcttttaataatggtttagggcaaatgtgtaaaaccccagccctcctttctcaa 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tagcttgcacctaataatggtttagggcaaatgtgtaaaaccccagccctcctttctcaa 213
Query: 181 tataagaaaacc 192
||||||||||||
Sbjct: 212 tataagaaaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space: 107456
Effective search space used: 107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
