Query= MSMg01no146_a11.b1 MSMg01no146_a11.b1 CHROMAT_FILE:
MSMg01no146_a11.b1 PHD_FILE: MSMg01no146_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:19 2005
(597 letters)
>mm_chr1_169914810_169915805
Length = 996
Score = 969 bits (501), Expect = 0.0
Identities = 520/527 (98%), Gaps = 3/527 (0%)
Strand = Plus / Plus
Query: 73 atctccagttacttctattttctagcagatgacataattttattctttttttgcaaaata 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atctccagttacttctattttctagcagatgacataattttattctttttttgcaaaata 330
Query: 133 atcctatctctctct--ttctctctctctttctatcttccatgattttatgtataatgat 190
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atcctatctctctctctttctctctctctttctatcttccatgattttatgtataatgat 390
Query: 191 ttttcttcatctattcattgattgataaacacctaactgattcaataactaggcaaatgt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttttcttcatctattcattgattgataaacacctaactgattcaataactaggcaaatgt 450
Query: 251 caatattgtcaaaaataaacatggaaaggctgtttgcatctctgtagtagatgacttatg 310
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 451 caatattgttaaaaataaacatggaaaggctgtaggcatctctgtagtagatgacttatg 510
Query: 311 ttgcttctagcatattcccaggcactatatagatgatactatgctggctctatttttagt 370
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttgcttctagcatattctcaggcactatatagatgatactatgctggctctatttttagt 570
Query: 371 tattgaggatcctccatgctgatttccatggagaatgtactactttaaatccccatcagc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tattgaggatcctccatgctgatttccatggagaatgtactactttaaatccccatcagc 630
Query: 431 agtatatagggttcctttctcctgtgttcccacaggcatttgttatttgtttcctttggg 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agtatatagggttcctttctcctgtgttcccacaggcatttgttatttgtttcctttggg 690
Query: 491 tttgctgttgttgtttgtttgtttgttttcttataagccttattttttctttttttgttt 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 691 tttgctgttgttgtttgtttgtttgttttcttataagccttattttttctttttt-gttt 749
Query: 551 ttaagagaaaacaaaacctaatacattgaaataggacaaaacaaaca 597
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ttaagagaaaacaaaacctaatacattgaaataggacaaaacaaaca 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space: 578782
Effective search space used: 578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_a11.g1 MSMg01no146_a11.g1 CHROMAT_FILE:
MSMg01no146_a11.g1 PHD_FILE: MSMg01no146_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:19 2005
(562 letters)
>mm_chr1_170081803_170082764
Length = 962
Score = 1046 bits (541), Expect = 0.0
Identities = 556/561 (99%)
Strand = Plus / Minus
Query: 2 atgccaaacacactaatcaaatatatttcccgctatgcaataatttaagacatgttccag 61
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 atgccaaaaatactaatcaaatatatttcccgctatgcaataatttaagacatgttccag 703
Query: 62 tcatggtacctctcccagtattgtgacctagggatccagatctttgttgctcatcaccca 121
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 702 tcatggtacctctcccagtattgtgacctagggatccagatctttgttgcttatcaccca 643
Query: 122 cacatgtcatctaccatacttagccagcaggaagaaggggtgtgaaggaggtttactcac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cacatgtcatctaccatacttagccagcaggaagaaggggtgtgaaggaggtttactcac 583
Query: 182 ttcttgaaaatcttgatcaagacttgcatttagatttctaagtctaaggactagggataa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttcttgaaaatcttgatcaagacttgcatttagatttctaagtctaaggactagggataa 523
Query: 242 tagtggaagcctagaaaactattccctagctaggcaaccacttcctcatagtaacgccac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 522 tagtggaagcctagaaaactattccctagctaggcaaccacttcctcatagtaacaccac 463
Query: 302 atgatacctttttaaatgactggccaagtgaccaagagtaaaaacaaaagacgaatctat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atgatacctttttaaatgactggccaagtgaccaagagtaaaaacaaaagacgaatctat 403
Query: 362 atgcctgtgtcattgagtagacacatgtcaagtgaatatatggctagccaccattctaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atgcctgtgtcattgagtagacacatgtcaagtgaatatatggctagccaccattctaga 343
Query: 422 caaggttacattatgcctcagttgtaaaggttgagaaatgggcatggtagcatgtaggat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caaggttacattatgcctcagttgtaaaggttgagaaatgggcatggtagcatgtaggat 283
Query: 482 atgtaccccaatattgccctttcaagggagaggaaacagaagtacttatgctatgaaagt 541
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 282 atgtaccccaatattgccctttcaagggagaggaaacagaagtacttttgctatgaaagt 223
Query: 542 gtgagaatgcaaaagagaaaa 562
|||||||||||||||||||||
Sbjct: 222 gtgagaatgcaaaagagaaaa 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
