BAC Information

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BAC

Clone NameMSMg01-146B09
Chromosome1 (Build37)
Map Location 40,954,150 - 40,954,835
singlet/doubletsinglet
Overlap genePpia-ps1_352.1
Upstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182
Downstream geneLOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146B09.T7 (MSMg01no146_b09.b1)MSMg01-146B09.TJ (MSMg01no146_b09.g1)
ACCAG349717AG349718
length1,2051,217
length of high quality
(start - end)
735 (88 - 822)686 (129 - 814)
definitionCHROMAT_FILE: MSMg01no146_b09.b1 PHD_FILE: MSMg01no146_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:26 2005CHROMAT_FILE: MSMg01no146_b09.g1 PHD_FILE: MSMg01no146_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGACTCTTTTTNNNCTCAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGGGAAAGAGTCAAGCCTTTTAGATTTGCCCTGAACTCT
GAGGAAACTGGACACATCCTACTGACAACCATGCCCCAGATATAGAGTAG
AATAAACTGGTTATATGTTACAAGCTAGTCAGGAAATGCTTATGGCCTAA
GCATTTATTCATAAGTGATTAAGTCTCAGAGTGTTTATTCTGGGAACAAA
GAGACAGGGTAGAAAAGCTTGAGGCTACAGTAACCAGCATGGAAAGATAT
TCCCATGATGCAGTAGTGGCACTTTTATCTTGGGGGTTACTAACAATGGT
TGAATGGTCTCATAGTTCTTAAGGTTCACTTAGTGGGAGAGATAGATGCC
TAGTACTGTAAACCTAGCCAACTACCTGTGACTAGAGAGGTCATGGATCC
TAAAGAGGAACCTACTCTTGTCACTTCCTTAAACCAATATAGTCTCTAAC
TGCTTTCTTAATAGTTATTCTTACACTGGCAGATAAGCATAGCTCTCACT
TCTCCTCAAGAAGCTCATTTTTGAACAAGTCAAGACTTACTGCAGAAATC
CACAACAGGTCAAAGTGTGGAGACCAACACACTGTACTGTGCCCTACCCC
ATCCAAGACATCTACAAAGCAAGCACTATAGCTAAGGCTCATGGAACATC
ACAGAAGAGGGGTGGAAAGTCTGTAAAAGCCAAAGGATCATGTACCTGCT
ATGAGATAGTGTCTTATAGACATGGCAAAGTCACTGTGAAATCTCAATAC
AACACCTGCCTAAACAAAACCTGCATAAGGACATGTAACAGCTGACATGC
CAACATAGAACAGGGAAATCTCATAAGTTCTCACCCTTAGGTGACTAAGG
ATAGGTGACCACTGGCTGCTGAAAGAGGAGTCAGTTTCTTCAGGAATGAG
GACCCTACCCTATTTGTTATCCAATCTCAAGTGAATCCCATGTGTGCTCC
CAAACCCTTTTACAGATCCACCACATCTATTAAACTCACTGAATTGTAAG
GTTGTGTGGTGTTTGTTTTTGGTAAAACAATTTTTTTTTCATAAAATTTT
CCGTGGATGTGTGGCAGTAAATTATGAGAAATATCTTTGTATTCTTGTTC
TAAATAATAAAAGCGGCTCTATCACTCCTCTCATTTTAATATATTCCAAT
ATATG
NCCAATCTTTTTTTTAACGCAAGGTAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAATTAGAAAATAAAT
AAGTACATTTCTATACGGCCCGCAACTAAAGCCATACCCGGTAATTTATA
GCATTAAGCCCCTGTGCAGTAGGTTTCCAAAAACTACAAACTAGACATTT
CAGCTGAACACACAGAATCAGATAACGGTTTACACCCAAGTAATTTTGGA
TGGAGAAGCAATGAACATATAACTGGAGACATTTTTAAAAATTTAAAATA
TAGGCCAGGAGTGGTGGTGCATGTGTTTAATCTCAGGACTTGGGAAGAAG
AGGCAAGTTGCAGGCTAGCACAGTTTATAATGAATCTCTGGTTACCCAGG
GCAGCATATATGGACTGTCACAATAATTAAAGAAATTAGAACAGGGTAAT
AATTGACTAAACTATTATAGCTAATGATGAGGATTTCTTTTGAAAAGGAT
CTTTGTTGGCATCAACAGTTGTTGGAATGGAGGTAGAGAAAAAGATGAGA
GCATGGGGAGATGGGGAGCACGGGGAGCAATCACATGAACCCCAAAGAGA
GACCCCTGGTACTCGCCTGGAGCTATTGAGATGCCAGGACAACACCACAA
ACAAGCTTATCTCTATTGATTGGGATTGCTTTGTGAAGTGGGGAGAAATG
TAAGGGGAACAAACTGACTAAAGGAGATGTATAAAACCTTAATAACCCTC
CATCTTTAGAAGAAGCTGAAAAGTAATTATGAACCTCCCCCAAATAAAGC
TCCAGGTCCAGATGGCTGACTATGCTGGCCAGGCACTGGAAGAATAAATA
AATATTGAGGGTATATATTGGGGGTAGAGCACTTGCTTAACATACAAAAG
ATTTTCCCTAGAATCACCATCATCATTATCATCAACAACAACAACCACAG
TAAAACAACAAGGTGGTGTTGTCTTCCCCCCGAGTCTCATGAATAAGGGG
ATGAAGATGACCTGTTTAAAAAACACCTTCCGGGAAGCCTGTGACATACC
CTGTAAACTTACCCTGGAAATAAGTGTAAAACGCAGGCCATTTTCCCCAT
TCCTATAAAACCGCTAATAAATTTTTCCCACAACGTGAAAATATCCCTAT
GGGTTAATTCCNCACCTTTTTCTATTTATGTTAAATAATAAACTCCGGTT
TTCGTAAGTTTGGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_b09.g1 MSMg01no146_b09.g1 CHROMAT_FILE:
MSMg01no146_b09.g1 PHD_FILE: MSMg01no146_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:27 2005
         (686 letters)



>mm_chr1_40953950_40955035
          Length = 1086

 Score = 1265 bits (654), Expect = 0.0
 Identities = 678/686 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagccatacccggtaatttatagcattaagcccctgtgcagtaggtttccaaaaactaca 60
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagccatacttggtaatttatagcattaagcccctgtgcagtaggtttccaaaaactaca 260

                                                                       
Query: 61  aactagacatttcagctgaacacacagaatcagataacggtttacacccaagtaattttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactagacatttcagctgaacacacagaatcagataacggtttacacccaagtaattttg 320

                                                                       
Query: 121 gatggagaagcaatgaacatataactggagacatttttaaaaatttaaaatataggccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatggagaagcaatgaacatataactggagacatttttaaaaatttaaaatataggccag 380

                                                                       
Query: 181 gagtggtggtgcatgtgtttaatctcaggacttgggaagaagaggcaagttgcaggctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gagtggtggtgcatgtgtttaatctcaggacttgggaagaagaggcaagttgcaggctaa 440

                                                                       
Query: 241 cacagtttataatgaatctctggttacccagggcagcatatatggactgtcacaataatt 300
           |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 441 cacagtttataatgaatctctggttacccagggcagcagagagggactgtcacaataatt 500

                                                                       
Query: 301 aaagaaattagaacagggtaataattgactaaactattatagctaatgatgaggatttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagaaattagaacagggtaataattgactaaactattatagctaatgatgaggatttct 560

                                                                       
Query: 361 tttgaaaaggatctttgttggcatcaacagttgttggaatggaggtagagaaaaagatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgaaaaggatctttgttggcatcaacagttgttggaatggaggtagagaaaaagatga 620

                                                                       
Query: 421 gagcatggggagatggggagcacggggagcaatcacatgaaccccaaagagagacccctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagcatggggagatggggagcacggggagcaatcacatgaaccccaaagagagacccctg 680

                                                                       
Query: 481 gtactcgcctggagctattgagatgccaggacaacaccacaaacaagcttatctctattg 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 gtactcgcctggagcttttgagatgccaggacaacaccacaaacaagcttacctctattg 740

                                                                       
Query: 541 attgggattgctttgtgaagtggggagaaatgtaaggggaacaaactgactaaaggagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attgggattgctttgtgaagtggggagaaatgtaaggggaacaaactgactaaaggagat 800

                                                                       
Query: 601 gtataaaaccttaataaccctccatctttagaagaagctgaaaagtaattatgaacctcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtataaaaccttaataaccctccatctttagaagaagctgaaaagtaattatgaacctcc 860

                                     
Query: 661 cccaaataaagctccaggtccagatg 686
           ||||||||||||||||||||||||||
Sbjct: 861 cccaaataaagctccaggtccagatg 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)