BAC Information

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BAC

Clone NameMSMg01-146H04
Chromosome1 (Build37)
Map Location 99,515,312 - 99,515,717
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
Downstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146H04.T7 (MSMg01no146_h04.b1)MSMg01-146H04.TJ (MSMg01no146_h04.g1)
ACCAG349985AG349986
length1,2011,231
length of high quality
(start - end)
644 (91 - 734)575 (141 - 715)
definitionCHROMAT_FILE: MSMg01no146_h04.b1 PHD_FILE: MSMg01no146_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:14 2005CHROMAT_FILE: MSMg01no146_h04.g1 PHD_FILE: MSMg01no146_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTTCTTNNNNNACATTGGGCGCTAAXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGACTATTCCTGATTCCTTTATTATCCGGTTGAATGTGAA
CAGTTTCATGTTTTACCGTCTTTTATCTATTTGTGCCTGTGTTGTGTGTA
GACTGACATATATGAAAGTATTTGCATTCTTATATATGAAAACATCCTGT
TTGAGCATCACCATTTATGGAAAATGCTTTCTTAATTCCTGTGTGTGTTT
CTTGCTTTTTTTTTTTAACCACAAATCAGGTAGCCATAGAAATGTAGATT
CATGTCTCGGTCTTCAGTTTGATTCCACTGAGCAATTTGTCTGTTTTTAT
GCCAATGCCACTTCATTTTTATTCCTAAAAATCTGTAGTGCATGTTGAAA
TTGTTAATTGTAATACCACTAGCAACTATTTAATTCTTTTAGACATCCTG
TTTTGTGTCTGTGGGTGTACATGTTTCTACATGAGTCTGAAAACTGTCAT
TCAAAGTCTGTGAAGAATTGTGCTGGAATTTTGATGGAGATTGCACTTTT
ATCTGTAAAGTGTTTTTACTAGGATGATCATTTTTACTAGGTTAATCTAC
CAATTCATGAGTATAGGAGATCTTTTGATCTGATGTTTCTTCAAATACTT
CAAAGACTTGAGACTCTTACTCTACAAATCTTTTATTTGCTTGACTAGAC
TTACCGCAAGATACTTTATATTATTTGAGGCTATTGTGGAAGAAGTGCGG
TTTTTTTCTAGTTTCTTTCTAGGTCCATTTGTTATTTTTAAATAGAACAG
ATACTGTTTTATGAGTTATTTAGTATTGACATTTTTGCTGAAAGTATAGC
CGTTAATGATTGACTTTTTTATTAAATATTTTCTTAATTTACATTTTAAA
TGTTATCCCCTTTCTTAGTTTCCCCTCCAAAAATCCCCTATCCCCTTCTC
ATTTCCCCCTGGCCCCCCAATCCACCCAATCCCATTTCCTGGTCCCTTGG
ATTCCCCCTATTCTTGTCTTATTATATCCTTTCACAGTAACCAAAATCCC
CCCCCTCCCCTTGTATTACCTCCTATTGCCTTTCCTCTTGTCATTATATA
CTGTCTATAATCCCCAATTTTCTCCCCCTGTTTTTTTTCTTTTTTATTTT
GGTCTTATATTCTTCTTAATAATACCTTTTATTATTCCCTTATTTTATCT
C
CATGCTTTTNTTNNACGATCGTGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATAAATGTCCGTCACCTTTTG
TTGTGCAAACCATACTCCTTTATTTACCGCTATTGGCCAAATAAAGATGC
CTACAGCCTGTAGCTGGGCAGAAGGGAGGTAGGCGGGGCGTGAGTTCTGG
GCCTTGTGGTCAGAGGCAGAGATCAGTAAAGAAGGGAAGGAGAAAGGAGA
CAGAGGTTGAGAAGGTGCCATAGGGTAGGTGGAACCTGAGCCCATGGCCA
TGAGGGCCAGCCTATTGGAGTAGGAATGGCCCAGGCAGAGCAGAGCAAGT
GATACCTTGGGGAAGTAGACAAACTAGTATAGAGGGTTGATACCTGCCTT
GCTCTAATGCTTTAAGGCTTATTATAAATATTAAGGTTTTGTGTCTTTTA
TTTGGGAATTAAGTGAGCAAAGGTGGGGTAGAAACCCATAAATAATATTT
CCCACAACAGAAGATGTTTTCTGTGGGTTTTTTTTAATTCATTTTGTCAC
AACTCTAGCAATTAAGAAAAATTATATTACTGATCCCCATATTTGAGATT
TTACAAAAGCTCCTGTAGTCTCATGTAGGAGAAAGGTGGAATGGTGATAC
ATTTGTCCTTTTTGTTTGTTTGTTTGTTTTGTTTTTAAGTTATTATTATG
CAATTTGTCTTTCAACCAAGTGAAGGATTTTTTTTTTTTAATATATGCTG
TTCTAAAACTGAGGCACTTTAAATAAAAACACCTGAGTGTTTAACAAAAT
AAACCATATTCTGCTGGGGTGAGCCTGATTTCTTGCAAAATGCAAAGAGT
CTGCCGTGAAACACTTATTGAAACCCCTATCATTGGCTTCTTGTTATCAT
GCCCAAATATCTGCTTGTGGTTTTTATATGGTTGACTTTAACTACTCCTT
AACCCCCCCTGGTATGAAACAATGGTTTTTTCCTATTTGAATTATCTCCT
GGCTAAAAAAAAAATTGCCCTGCCTCTAAACTCTTTTCCCCTTTCTGGGA
AATTCCTTCTTTCTTTTTCCCATGAACTGTTGTCAACCATCTAACTTTTA
AATATCTCTCTGATTCTTTAATACCTGCTCAACTTTTTCTATCAAACCGT
TCCCTCTACTTCCATTCTCCTCTTACTTACTCTCTCTTTCTCTCCATCTT
TTCTTCTTAAATAACTATTGCTTTCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_h04.g1 MSMg01no146_h04.g1 CHROMAT_FILE:
MSMg01no146_h04.g1 PHD_FILE: MSMg01no146_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:14 2005
         (575 letters)



>mm_chr1_99514743_99515717
          Length = 975

 Score =  777 bits (402), Expect = 0.0
 Identities = 405/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 170 gcctattggagtaggaatggcccaggcagagcagagcaagtgataccttggggaagtaga 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 gcctattggagtaggaatggcccaggcagagcagagcaagtgataccttggggaagtaga 916

                                                                       
Query: 230 caaactagtatagagggttgatacctgccttgctctaatgctttaaggcttattataaat 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 caaactagtatagagggttgatacctgccttgctctaatgctttaaggcttattataaat 856

                                                                       
Query: 290 attaaggttttgtgtcttttatttgggaattaagtgagcaaaggtggggtagaaacccat 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 attaaggttttgtgtcttttatttgggaattaagtgagcaaaggtggggtagaaacccat 796

                                                                       
Query: 350 aaataatatttcccacaacagaagatgttttctgtgggttttttttaattcattttgtca 409
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 795 aaataatatttcccacaacagaagatgttttctgtgggttttttttaatccattttgtca 736

                                                                       
Query: 410 caactctagcaattaagaaaaattatattactgatccccatatttgagattttacaaaag 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 caactctagcaattaagaaaaattatattactgatccccatatttgagattttacaaaag 676

                                                                       
Query: 470 ctcctgtagtctcatgtaggagaaaggtggaatggtgatacatttgtcctttttgtttgt 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctcctgtagtctcatgtaggagaaaggtggaatggtgatacatttgtcctttttgtttgt 616

                                                         
Query: 530 ttgtttgttttgtttttaagttattattatgcaatttgtctttcaa 575
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttgtttgttttgtttttaagttattattatgcaatttgtctttcaa 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)