BAC Information

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BAC

Clone NameMSMg01-146L03
Chromosome1 (Build37)
Map Location 109,959,327 - 109,959,895
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640, EG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146L03.T7 (MSMg01no146_l03.b1)MSMg01-146L03.TJ (MSMg01no146_l03.g1)
ACCAG350162AG350163
length1,2071,174
length of high quality
(start - end)
304 (466 - 769)757 (91 - 847)
definitionCHROMAT_FILE: MSMg01no146_l03.b1 PHD_FILE: MSMg01no146_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:46 2005CHROMAT_FILE: MSMg01no146_l03.g1 PHD_FILE: MSMg01no146_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATTCTATTGNTAAACATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTAAGGTTTCTCACCCTTTAAGGCCCCNGNGNNNNNNGA
GAGNAANTNANAAGCCTTTAAACCCACGANNNNACCAAGANCANANNNNA
TTTGGTGGATTAAAATTTAGAGCAATTTGCCAGTTTCAGGAACAAACACA
AGAGTCTAGAAGGTAAATGAAAGATTGTTCCTTGATTAGGAATAGTTCTC
ATGTTCAAGTCCCTCTCTCAGCACTGAGACATTGGCACACATGCTGGCCC
AGTCTCTGGGTGTTCATATGTGGGTCAGTCCTGTTGTGTCTGGAACTGAC
AGTTCCCTGGGAGTCATTCACCCCTTTTGTCTCTTATTCCAATCACACTG
CTTTTTTTCTGCAGANTCCNAAGGGGAGGGGTGATAAAGACATCACTGCC
CTCAGGTGTGAGTGTTCCCAAATCTCTCACTCTCTGAAGATCAGAATACA
CCCTCTGAAAAACATATTCAATAACAACATAGACATATACATACACACAG
AAATACATATAGACACAGATGCTTACACAGGCACATACAGACTATACACA
CAGACACACACCCAAAGACACAGACACAAACTCATACAGACATAAATGCA
CAAACAAATATGCACAGAGACATATATACATATGCAGACACATACAGATT
CATAGATGAAAACAGAAATAGAAATATACACAGATACATAACACATACAT
AGACACACCACATCACACACATTTTTTTTTCTTCACACACACACACACAA
TTTCTACCTCTTTGGAACACTGTAGCTAGCCCATAACCACATTTAAAGAT
ATTCAACCTTGCTAGTAGGTAAAAAGTGCTTGAAATGCCGATAATAGAAT
AAAATACTTTTTTTGTTTGGTTGAATTCCCAGAAAAAAATTCCAATACAA
TTCCCTAGNATTTTACGGGAAGGAGGTTTTTTTTTTTTTAAGGGAGGAAA
ATTTGGTATAAACTTTTTCCCTGAAAGTTTCTGGGGAAAACTTTATGTCA
AATACTTTTAATAAAATGGCCCTCCCATTTTATATTTTCTCCAGAATTTT
ACTGGTTAAAAAAAGATACAAATCTTTCTCGAAAATTTTTTCTCTCATAA
AATTGTTCATTTCCCTTAATGAAAATAATAATGGCTGTGTACAATATATA
TACTCTT
NCCAATTTTTTNNNTATAGATGTGAGNCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAATAGACCGACAGGGTATT
GGCTGATGTCCAGTACCTCTGTGTCCCTAGCCTGCCCCTATCCCAAAAGT
CTCCTCCTCTAGAGCTTCTAATATGTGGCAGCAAACCTCCAACTTTCAGG
GAGCAAGAAACCTCCGGATTAGTGAAAGACCACTCCAGAACTGGAACAAC
ATCACTTCTGCCATATTTGTGTACGGAAAAGAGTCATGGGCTGCTATATT
CTGTCCTTGGTGCCAAGGGCAGAAAGACTCACCCATTAAAAGACACATGG
TAAAATCACATGGTGAAAGTGTGGAAGATGGCAATTATTTGTAAGACCTT
CCTTATAAAATAAGGTATTGCACAACTGTCATGTTTTTAAATGAAAGGGA
TAGTTCCTCTTATAATATTTTATTATACATAGTAGTATAATAATAATTTA
TTATATATTTCATGGCCAGTTTCTTTTGAAGCAAGTGGTTATTGAGATGC
TTACTTTATAAATGAATATTTTGACTACACATACAGATATGTAGCAACAA
TGGTGTTTTAATATATGTGCATGCATTTGAATAAATCCTAAATCCATCCT
AAAAGAGGTAAAAATCAAGTGGATATATTGGTCTATTCAAATTACAATAT
AGTTTGACTTTTGTAAACATATTTATGCAAAACTTCTTAGATAATTCCAA
GAAGAAAAATAATGACATCTCATGAGTGAAAATAGATCCTTCTAACAAAA
TCTAATTCCTGCAGTGCTCGTTGTTCTTCCTAGCTCACACTTAAAAATTG
AAATCAGTCCTGTGAACTTGATCTCTATAGTTATTGTTGTCAGTTTACCT
AAAGATAATACCATAAAGTCAACTTACGAGGTCTTTGATTTTTATTGCTG
AAATTTGGCGAAATATACAATATATTTGACAAGTATTTAAATTATTAAAA
TTTGACCAATTATGTAAAAAAAAAAACATGTAAAAATATGTTTTATTCCA
AGCCTGGGTAAAAGAACTGAAATTGTTAAAAAAGGTTTTTTCCGGGGTTC
TTTTTTTAAATCCCCAAATTCAAATTATAGGTCTTTTTTCTATGATCGCT
CCCAATAATAAAAAAATTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_l03.g1 MSMg01no146_l03.g1 CHROMAT_FILE:
MSMg01no146_l03.g1 PHD_FILE: MSMg01no146_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:46 2005
         (757 letters)



>mm_chr1_109959327_109960483
          Length = 1157

 Score = 1046 bits (541), Expect = 0.0
 Identities = 562/569 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagggtattggctgatgtccagtacctctgtgtccctagcctgcccctatcccaaaagt 60
           |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||
Sbjct: 569 acagggtattggctgatgtccagtacctctgtgtccctagcctgtctttatcccaaaagt 510

                                                                       
Query: 61  ctcctcctctagagcttctaatatgtggcagcaaacctccaactttcagggagcaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctcctcctctagagcttctaatatgtggcagcaaacctccaactttcagggagcaagaaa 450

                                                                       
Query: 121 cctccggattagtgaaagaccactccagaactggaacaacatcacttctgccatatttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cctccggattagtgaaagaccactccagaactggaacaacatcacttctgccatatttgt 390

                                                                       
Query: 181 gtacggaaaagagtcatgggctgctatattctgtccttggtgccaagggcagaaagactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtacggaaaagagtcatgggctgctatattctgtccttggtgccaagggcagaaagactc 330

                                                                       
Query: 241 acccattaaaagacacatggtaaaatcacatggtgaaagtgtggaagatggcaattattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acccattaaaagacacatggtaaaatcacatggtgaaagtgtggaagatggcaattattt 270

                                                                       
Query: 301 gtaagaccttccttataaaataaggtattgcacaactgtcatgtttttaaatgaaaggga 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtaagaccttccttagaaaataaggtattgcacaactgtcatgtttttaaatgaaaggga 210

                                                                       
Query: 361 tagttcctcttataatattttattatacatagtagtataataataatttattatatattt 420
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttgttcctcttacaatattttattatacatagtagtataataataatttattatatattt 150

                                                                       
Query: 421 catggccagtttcttttgaagcaagtggttattgagatgcttactttataaatgaatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 catggccagtttcttttgaagcaagtggttattgagatgcttactttataaatgaatatt 90

                                                                       
Query: 481 ttgactacacatacagatatgtagcaacaatggtgttttaatatatgtgcatgcatttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ttgactacacatacagatatgtagcaacaatggtgttttaatatatgtgcatgcatttga 30

                                        
Query: 541 ataaatcctaaatccatcctaaaagaggt 569
           |||| ||||||||||||||||||||||||
Sbjct: 29  ataagtcctaaatccatcctaaaagaggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 757
Length of database: 1157
Length adjustment: 10
Effective length of query: 747
Effective length of database: 1147
Effective search space:   856809
Effective search space used:   856809
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)