BAC Information

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BAC

Clone NameMSMg01-146L24
Chromosome1 (Build37)
Map Location 43,803,740 - 43,804,169
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik
Downstream geneUxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146L24.T7 (MSMg01no146_l24.b1)MSMg01-146L24.TJ (MSMg01no146_l24.g1)
ACCAG350204AG350205
length1,1781,196
length of high quality
(start - end)
635 (134 - 768)636 (90 - 725)
definitionCHROMAT_FILE: MSMg01no146_l24.b1 PHD_FILE: MSMg01no146_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:53 2005CHROMAT_FILE: MSMg01no146_l24.g1 PHD_FILE: MSMg01no146_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCCCTTCGNNNNCATCACTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTGTAATTTTGAAAATCTTTTAAACCCCATCAGAAGGNAA
ACGAGACTTTACTATTCTTAAAACCTACCACAGCCCACATACGTGTCTTG
TTTGCATCTTACTTACCATGATAGAGATGGGGCCATGTTCATCTACAATT
ACATTATAGGAAGGAAAATACAGATTTTTCATCAGGAAACTTAAGCTGTG
GAGTGGGTGGAGCTGGAATGGAGCTTGAAGGTTCATGTGACAACATTCAG
CTCCATTTTTTGAGGTACTGAGAGGGTGGAAACTTTTTCTTAAGATGGTG
CTCCAAGGAGGTGTCATGATGTGGAACTTGGCTCTTCCAGCACCATGTCT
GCCTGTAAGCTACCATGCTTCCCTCCATGATGATAATAGACTGAACCTCT
GCAACTGTAAGCCAGCCCCTATTAAATGTTTTCTAAGAGTTACCTTGGTA
ATGGTGTCACTTCGCATCAATTAAACTAAAGCTGAGACACCTACCCAAAG
GCTTTCCTTCTACAGAGTCAAGACGACAAAATAGACAATGGAGTCCAGGT
TCCTTGGCTGTTTGGACTCAGGTGGTTGTGCCAGTGTCTCCTCAGGGGCT
GGGGGGCAGGTAGACTGTGAGCACTCTGTGTGGGACTGGAGTTTGTACTG
TCAGTTTCCTTGGTTGGAAGCCTTTAAGCTTCTTGAACTTGGCTGTACCT
GTGTAGCATTTCAGCCTGCAGCTAGCTAGCCTAACATCCTATGTAAGCAA
ATCTAAAAAGATCCATATTTTATATGAATAAGTTTAATCTACTGCTTCTG
CTCTCTAGAGAATCCTGACTAACCCGANCAATTTACCAAATCCGAAAATA
TTATTAATGAAAAAAAAATAGCACTCCTTTTTTAAATCAAGACCCCAGCA
AAGATGTCCTTCTGGTACAGTGACCCAATCTTCCCCCCCCCTTTAACATT
TGCCATGGAATTTTGAAAACGCCTCCCTTCATTGGAGAGAGTAATAACGA
AATATAAAATTTCCCCCAAGGTTAAAATAATCCCAATCCGGGNNNNNNNT
NNGNAAAAAAAATTGGGGTAAATATTTTTTTAAAAAAAATTTTTAATTGG
CTANATTTCCTCGTGGGTGTTTTCCCTN
TTTTTTCCCGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCTTTAATCGTTAGNTCTGTANCCCATTTTCTA
ATAGAGTCCTTTGATTTTCTGCAGCCCATCTTCTTGAGTTCTTTGTATAT
ATTGGATATTAGTCCCCTATTTGATTTAGGATTGGTAAATATCCTTTCCC
AATCTGTTGGTGGTCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTACAG
AAGCTTTGCAATATTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGC
ACAAGCTGTTGTTCTGTTCAGGAATTTTTCCCCTGTTCCCATGGGTTCAA
AGCTTTCCCCCACTTTCTCCTCTGTAAGTTTCAGTGTCCCTGGTTTCATG
TGGAGTTCCTTGATCCACTTGGACTTGAGCTTTGTACAAGGAGATAAGAA
TGGATCATGATAACCACCAGTTGAGTCAGCACCATTTGTTGAAAATGCTG
TCTTTTCTCCATTGGATGGTTTTAGTTCCCTTGTCAAAGATCAAGTGACC
ATAGATGTGTGGATTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTA
TCTGTCTGTCACTGTACCAGTACCATGCAGGTTTTTGTTTGTTTGTTTGT
TTTATCACAATTGCTCTGTACTACAGCTTGAGGTCAGGGATGGTGATTCC
CCCAGAGGTTCTTTTATTGTTGAGAATAGTTTTTGCTATCCTAGGTTTTT
TGTTATTCCAGATGAATTTGCAAATTGCCCTTTCTAACTTTGTGAAAAGT
TGAGTTGGAATTTTTGATGGTCATTGCACTGAATTCTTAGTAAATTGCTT
TCGGCGAAGATAGCCATTTTTTCCTATACTAACCCTGAAGGATGGGAAAA
TCTTTTCCACTCTTCTGAAGATCTTTCTTCAAATTTTTTCCTTCCTGGGA
CTTGGAAGTTCCTTATCCCACCTATATTTTTTCCCTTTTCCCTAATTTTA
AAATCCTCCCCTCATAAGCTTATTTTTAATATTTATCCTCGCGGAACTAA
TTTGGTTCAAAGGCCTGCACGTATTATCCCCCATATTTTCTTTTTTCTTT
TCTCATCCTATATTTTACACCTCCTTTGCGTGCTCTAACAACATAGCTTC
CCTCTCTTTAACTCTTCTCTCTCTTCGCCTTTCACTTTCTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_l24.b1 MSMg01no146_l24.b1 CHROMAT_FILE:
MSMg01no146_l24.b1 PHD_FILE: MSMg01no146_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:53 2005
         (635 letters)



>mm_chr1_43803740_43804774
          Length = 1035

 Score =  824 bits (426), Expect = 0.0
 Identities = 429/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacatacgtgtcttgtttgcatcttacttaccatgatagagatggggccatgttcatc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cccacatacatgtcttgtttgcatcttacttaccatgatagagatggggccatgttcatc 371

                                                                       
Query: 61  tacaattacattataggaaggaaaatacagatttttcatcaggaaacttaagctgtggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tacaattacattataggaaggaaaatacagatttttcatcaggaaacttaagctgtggag 311

                                                                       
Query: 121 tgggtggagctggaatggagcttgaaggttcatgtgacaacattcagctccattttttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgggtggagctggaatggagcttgaaggttcatgtgacaacattcagctccattttttga 251

                                                                       
Query: 181 ggtactgagagggtggaaactttttcttaagatggtgctccaaggaggtgtcatgatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ggtactgagagggtggaaactttttcttaagatggtgctccaaggaggtgtcatgatgtg 191

                                                                       
Query: 241 gaacttggctcttccagcaccatgtctgcctgtaagctaccatgcttccctccatgatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaacttggctcttccagcaccatgtctgcctgtaagctaccatgcttccctccatgatga 131

                                                                       
Query: 301 taatagactgaacctctgcaactgtaagccagcccctattaaatgttttctaagagttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 taatagactgaacctctgcaactgtaagccagcccctattaaatgttttctaagagttac 71

                                                                       
Query: 361 cttggtaatggtgtcacttcgcatcaattaaactaaagctgagacacctacccaaaggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  cttggtaatggtgtcacttcgcatcaattaaactaaagctgagacacctacccaaaggct 11

                     
Query: 421 ttccttctac 430
           ||||||||||
Sbjct: 10  ttccttctac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)