Query= MSMg01no147_a02.b1 MSMg01no147_a02.b1 CHROMAT_FILE:
MSMg01no147_a02.b1 PHD_FILE: MSMg01no147_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:28 2005
(630 letters)
>mm_chr1_130115923_130116959
Length = 1037
Score = 1042 bits (539), Expect = 0.0
Identities = 551/559 (98%), Gaps = 7/559 (1%)
Strand = Plus / Minus
Query: 79 agagctggctcagtggtacaaagcacttactgctcttgcaaagaacacgtttgattccta 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 agagctggctcagtggtacaaagcacttactgctcttgcaaagaacacgtttgattccta 978
Query: 139 gagtggtagctcacaacagtaaaaaaactccagtcccttgggatccactgccctcttttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 gagtggtagctcacaacagtaaaaaaactccagtcccttgggatccactgccctcttttg 918
Query: 199 acctccaagggtaacaggcatgcaaatggtgcttgcatatacattcaggcaagcatgcat 258
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 917 acctccaagggtaacaggcatgcaagtggtgcttgcatatacattcaggcaagcatgcat 858
Query: 259 acccataaaataataaataagtctaaaaaaaacaataaaactctagatgacgaggcagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 acccataaaataataaataagtctaaaaaaaacaataaaactctagatgacgaggcagaa 798
Query: 319 gcagaggtttagatgaaaatacaatagttat-------tgttaagtgtgaatatatgagg 371
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 797 gcagaggtttagatgaaaatacaatagttattgttaagtgttaagtgtgaatatatgagg 738
Query: 372 attctgcatgtatttgtttatatttacatgttttaagaatgcccaataatagcattttta 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 attctgcatgtatttgtttatatttacatgttttaagaatgcccaataatagcattttta 678
Query: 432 aagctttgtgattaattattggcaacatacacatagatttatatgaaattcatgctgatg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aagctttgtgattaattattggcaacatacacatagatttatatgaaattcatgctgatg 618
Query: 492 attgcttaataataacaattatctttgctgcttaagtggtagtaagccaatagttcaatt 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 attgcttaataataacaattatctttgctgcttaagtggtagtaagccaatagttcaatt 558
Query: 552 aaatggaaagagaaaggaattaaaaggagcgttaaagttctttgaggggctgaaaaattg 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaatggaaagagaaaggaattaaaaggagcgttaaagttctttgaggggctgaaaaattg 498
Query: 612 gctcacatgataaaaaatg 630
|||||||||||||||||||
Sbjct: 497 gctcacatgataaaaaatg 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1037
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1027
Effective search space: 636740
Effective search space used: 636740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_a02.g1 MSMg01no147_a02.g1 CHROMAT_FILE:
MSMg01no147_a02.g1 PHD_FILE: MSMg01no147_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:28 2005
(610 letters)
>mm_chr1_129986099_129987108
Length = 1010
Score = 1156 bits (598), Expect = 0.0
Identities = 607/610 (99%)
Strand = Plus / Plus
Query: 1 actcctagtcactcccattctcggggtgtaatagtggggtgatgggcaagcaacaaatca 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcctagtcactcccactctcggggtgtaatagtggggtgatgggcaagcaacaaatca 260
Query: 61 ggagctgtcacgccatatcaggtgctgaaacgtcacgctgcgggttataaaagcagcgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagctgtcacgccatatcaggtgctgaaacgtcacgctgcgggttataaaagcagcgcc 320
Query: 121 attttcccggttcggaatcttcctgagaagcaagcaataaagcttttgccacggaagatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 attttcccggttcggaatcttcctgagaagcaagcaataaagcttttgccgcggaagatt 380
Query: 181 ctggtttgttgcgtctttcttgccggtcgagcgggacgcaatagggaccaataaagtgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtttgttgcgtctttcttgccggtcgagcgggacgcaatagggaccaataaagtgga 440
Query: 241 aagagagaatcagctcccacaagttgtcctctgatcgccacaaacgcataggcagtacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagagaatcagctcccacaagttgtcctctgatcgccacaaacgcataggcagtacaa 500
Query: 301 gcacacagaataaatgaatgcaaaagaagttaaacaagcttggtggtaggagcacaggcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacacagaataaatgaatgcaaaagaagttaaacaagcttggtggtaggagcacaggcc 560
Query: 361 tttaatcccagcactcgggaggcaaagataggtgcatctctgagttagaggtctatggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaatcccagcactcgggaggcaaagataggtgcatctctgagttagaggtctatggag 620
Query: 421 atagttctaggacagtgaatattacacagagaaaccctgtctctgacaaaaaaaagttaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagttctaggacagtgaatattacacagagaaaccctgtctctgacaaaaaaaagttaa 680
Query: 481 acaaatatgaactatagttaaccatccatacacttaggtatgaaggagcataacaagaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaatatgaactatagttaaccatccatacacttaggtatgaaggagcataacaagaca 740
Query: 541 gcagcaatttactgtgagatgatttcaaaataagtaggatgggttgaagtgaagaaagaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcagcaatttactgtgagatgatttcaaaataagtaggatgggttgaagtgaagaaagaa 800
Query: 601 tggagggaca 610
||||||||||
Sbjct: 801 tggagggaca 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
