Query= MSMg01no147_b22.b1 MSMg01no147_b22.b1 CHROMAT_FILE:
MSMg01no147_b22.b1 PHD_FILE: MSMg01no147_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:37 2005
(700 letters)
>mm_chr1_40888916_40890017
Length = 1102
Score = 1261 bits (652), Expect = 0.0
Identities = 685/700 (97%), Gaps = 8/700 (1%)
Strand = Plus / Plus
Query: 5 ggaattcatagccactatgcctcaagatctccatgccaagatccaagtcagaaacgtcta 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcatagccactatgtctcaagatctccatgccaagatccaagtcagaaacgtcta 264
Query: 65 tctcccagcctccaggttagaatcactggggagccttccaattctggattgtagttcatt 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctcccaacctccaggttagaatcactggggagccttccaattctggattgtagttcatt 324
Query: 125 ccagatatagacaggttgacaaccaggaatagccacacaattattaagcagaggagactc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagatatagacaggttgacaaccaggaatagccacacaattattaagcagaggagactc 384
Query: 185 tgtacagtattggatgcatagagctcatgtactcagctcgctttctgttgatggtccttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtacagtattggatgcatagagctcatgtactcagctcgctttctgttgatggtccttt 444
Query: 245 attatcttagatttactttagagagcaatcagtggtcactctcttcccaattccacatag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attatcttagatttactttagagagcaatcagtggtcactctcttcccaattccacatag 504
Query: 305 caagttattattatgaaggatcattcgaattcaggattagagaatggaatgtgtacaaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caagttattattatgaaggatcattcgaattcaggattagagaatggaatgtgtacaaac 564
Query: 365 aacataatataatgtgtcaaagaatcaggaaggtgtcaaagagatcggaagttccagaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacataatataatgtgtcaaagaatcaggaaggtgtcaaagagatcggaagttccagaga 624
Query: 425 aaatttccggatgcttgaaggcatgcgcttcagcattttaggagcacagcagaaagttaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatttccggatgcttgaaggcatgcgcttcagcattttaggagcacagcagaaagttaa 684
Query: 485 gtacatgacagggtcacacaggattcttcctggagactatttttttt-----ctgcttgg 539
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 gtacatgacagggtcacccaggattcttcctggagactatttttttttttttctgcttgg 744
Query: 540 ttaaagtcccaggcaggcagtgtctctaacttattcttaatgtgaactaaccaaattcca 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaaagtcccagacaggcagtgtctctaacttattcttaatgtgaactaaccaaattcca 804
Query: 600 aattagttcataatgggcccacagtgtttgtggctgcattcaccatggtagtagcatcac 659
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 805 cattagttcataatgggcccacagtgtttgtggctgcgttcaccatggtag---catcac 861
Query: 660 gtaactccactgaagccttagttctcagcacacgcatgcg 699
|||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ataactccactgaagccttagttctcagcacacgcatgcg 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1102
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1092
Effective search space: 753480
Effective search space used: 753480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_b22.g1 MSMg01no147_b22.g1 CHROMAT_FILE:
MSMg01no147_b22.g1 PHD_FILE: MSMg01no147_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:37 2005
(663 letters)
>mm_chr1_41049587_41050650
Length = 1064
Score = 1261 bits (652), Expect = 0.0
Identities = 661/664 (99%), Gaps = 1/664 (0%)
Strand = Plus / Minus
Query: 1 cattcctcctttggatcatctttcatggttttaaggatgcttggagatgattcatttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cattcctcctttggatcatctttcatggttttaaggatgcttggagatgattcatttcta 805
Query: 61 tgcattcctgatatagcccaccacgaggccacacagattcagtgctaccatcctgcatgt 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgcattcctgaaatagcccaccacgaggccacacagattcagtgctaccatcctgcatgt 745
Query: 121 tcagagctgccccagctggctgagcacactcatcctgacctgtaggatgggacaatctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcagagctgccccagctggctgagcacactcatcctgacctgtaggatgggacaatctaa 685
Query: 181 tcatccttagggaatcccattctctagggtggcatggtcaattctgttcagtttcctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcatccttagggaatcccattctctagggtggcatggtcaattctgttcagtttcctctc 625
Query: 241 aatcccgacgggtggccaggaggggactgtgacaccaaaggaagaaaaacttttctgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatcccgacgggtggccaggaggggactgtgacaccaaaggaagaaaaacttttctgaga 565
Query: 301 cctagatctcaactcagaggatttggaaaagga-ttttttttcttctctaaattaactga 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 cctagatctcaactcagaggatttggaaaaggatttttttttcttctctaaattaactga 505
Query: 360 gattaatgaggaccacatatgtcaagtgcaaatttcattcctaatcattccctctttaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gattaatgaggaccacatatgtcaagtgcaaatttcattcctaatcattccctctttaaa 445
Query: 420 catttgaggcacactgggttgaaaagtagctctgggtttgatgtatcatctgccgtagaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catttgaggcacactgggttgaaaagtagctctgggtttgatgtatcatctgccgtagaa 385
Query: 480 cagagctcatgtggcttcgatgctggtgcctggtgtgctttgtctggtcttacatctgcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagagctcatgtggcttcgatgctggtgcctggtgtgctttgtctggtcttacatctgcc 325
Query: 540 cacgattttaataattcacttcattctgagtttgaggtacatgtgttcatcaagttttcc 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 cacgattttaataattcacttcattctgagtttgaggtacatgtgttcatcaaggtttcc 265
Query: 600 ttttgttcagaaggtcgttgtgtgacccaaatcacaggtctgtccttttactaggtcctt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttgttcagaaggtcgttgtgtgacccaaatcacaggtctgtccttttactaggtcctt 205
Query: 660 ctgg 663
||||
Sbjct: 204 ctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space: 688262
Effective search space used: 688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
