BAC Information

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BAC

Clone NameMSMg01-147E13
Chromosome1 (Build37)
Map Location 13,824,427 - 13,824,859
singlet/doubletsinglet
Overlap genenone
Upstream geneSulf1, Slco5a1, LOC383490, Prdm14, Ncoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273
Downstream geneLOC100039859, LOC100039869, Eya1, LOC665391, Msc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147E13.T7 (MSMg01no147_e13.b1)MSMg01-147E13.TJ (MSMg01no147_e13.g1)
ACCAG350597AG350598
length689683
length of high quality
(start - end)
463 (51 - 513)433 (73 - 505)
definitionCHROMAT_FILE: MSMg01no147_e13.b1 PHD_FILE: MSMg01no147_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:50 2005CHROMAT_FILE: MSMg01no147_e13.g1 PHD_FILE: MSMg01no147_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCNNATATCTATAATTGCGGCGCTAAACGACTCCTATTTGGAGAGGT
CCGCGGAATTCATCTTGTTACTTTTTCCTTTGCTGAGTATGAAGTATCTG
ATCTGTCCTTATCTTTTTTGATAACTTTTGGTTGAAAGTCGATTTTATTC
AATATTAGAATGACTATTCCAGCCTTTTTTCTTGGGACCATTTGCTTGGA
AAATTATTTTCTAGCCTTTTACTCTGAGGTAGTGTCTGTCTTTGTCCCTG
AGGGGGGTTTCCTGTATGCAGCAAAATATTGGGTCCTGTTTACCTAACCA
GATTGTTAGTCTATGTCTTTTTATTTGGTGAATTGAGTCCCCAATACTAA
GAGATATTAGAGAAAAGTAATTGTTGATTCCTGTTACTTTTGTTGTTAGA
GGTAAAATTCTGTCTATGTGGCTATCGTCCTTTAGGGTTGTTGAAAGATT
ACTTTTTTGCTTTTTCTAGGTTGCACATTCCCTCCTTGTTGGAGTTTTCC
CTTTATTATCCTTACAAGGACTGGATTTATGAAAAGATCTTATAATTTTG
GTTTTGTCATGCAATACCTTGGTTTCTCCCTCCATGGTAATTGAGAGTTT
TGCGGCCCTTAGTAGCCTGGGCTGGCCCTCGCGCCCTCCTAAGATCCGCA
TGACCCCCGCCCCAGATTCTCCTGCCCCCCTAACCCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTCCTATCCTCTGGGGTTCCTCTACC
TGATGCATGTCCTAGACTCAGCCACAAAACACAAGTTCCATCCATGGCTC
TCCAAACCCACAGGTCCACAGAGCTTACCTAGTCTTCGGGGCAGAGGCCA
TGGGATAAGATTTTTAAAGGGGCATTCAGATTCATTTGTTCTTTTGTATG
TGTAGTATATACGGTCTATTGACCTCCACAGGGTTATCAACCCAGATATC
TCAGATGGTGGGTCCCTGCTGATGAGGCCATTGATTCCCGGGTATCTTAG
GGATAATTACCTGTTATGGTAATTATGGTGGTGACATTTTCCTGACAGGA
AAAAGATAAGACATTCATTCACTCTCTTTTCCTAGAGATTATGAGGGTAG
TATTATTGTGAATGAAGGGGCTCTGATAAACACATTTAAAACAACAAAAC
AACAGCAACCAGCAGCCAACTAATTTCCTGCACAAGTAAAGTTTCTTTAT
GCAACGGAGACATCACATACACAGACACATCGTATGCAGTTCCTGAAACC
CCCGACAAGATGTTCACAGGGACAGAGGGAGCTCTCAGCTCTTGCCTTGT
GTGCCCCCTGACAACCCGCAGTGAAAAATGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_e13.g1 MSMg01no147_e13.g1 CHROMAT_FILE:
MSMg01no147_e13.g1 PHD_FILE: MSMg01no147_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:50 2005
         (433 letters)



>mm_chr1_13824227_13825059
          Length = 833

 Score =  837 bits (433), Expect = 0.0
 Identities = 433/433 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcctatcctctggggttcctctacctgatgcatgtcctagactcagccacaaaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttcctatcctctggggttcctctacctgatgcatgtcctagactcagccacaaaacac 260

                                                                       
Query: 61  aagttccatccatggctctccaaacccacaggtccacagagcttacctagtcttcggggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttccatccatggctctccaaacccacaggtccacagagcttacctagtcttcggggc 320

                                                                       
Query: 121 agaggccatgggataagatttttaaaggggcattcagattcatttgttcttttgtatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggccatgggataagatttttaaaggggcattcagattcatttgttcttttgtatgtg 380

                                                                       
Query: 181 tagtatatacggtctattgacctccacagggttatcaacccagatatctcagatggtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtatatacggtctattgacctccacagggttatcaacccagatatctcagatggtggg 440

                                                                       
Query: 241 tccctgctgatgaggccattgattcccgggtatcttagggataattacctgttatggtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccctgctgatgaggccattgattcccgggtatcttagggataattacctgttatggtaa 500

                                                                       
Query: 301 ttatggtggtgacattttcctgacaggaaaaagataagacattcattcactctcttttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatggtggtgacattttcctgacaggaaaaagataagacattcattcactctcttttcc 560

                                                                       
Query: 361 tagagattatgagggtagtattattgtgaatgaaggggctctgataaacacatttaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagagattatgagggtagtattattgtgaatgaaggggctctgataaacacatttaaaac 620

                        
Query: 421 aacaaaacaacag 433
           |||||||||||||
Sbjct: 621 aacaaaacaacag 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)