BAC Information

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BAC

Clone NameMSMg01-147H05
Chromosome1 (Build37)
Map Location 3,084,506 - 3,084,779
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneXkr4, LOC100038975, LOC664792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147H05.T7 (MSMg01no147_h05.b1)MSMg01-147H05.TJ (MSMg01no147_h05.g1)
ACCAG350718AG350719
length739724
length of high quality
(start - end)
279 (45 - 323)646 (79 - 724)
definitionCHROMAT_FILE: MSMg01no147_h05.b1 PHD_FILE: MSMg01no147_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:03 2005CHROMAT_FILE: MSMg01no147_h05.g1 PHD_FILE: MSMg01no147_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGATCCGCGG
AATTCCACAGTCTCTCGTTTCCTTAAGGTAAGAGGGTGATGGCTTCAGTT
CACTCATTCAGTTTTTCTGTCAATCACACTGCACCAGTCCCCTTGCTGGA
AACACAGCAGTGCTAAAATGTGACTTCTGTGGCTGTAGAATTTATAAAGA
GGAGAGACAAATAATACTATAGTGTACTGAGCAACTGAGCACAGGATGGA
ACATTCAACTGTATGTCATGAGTTTACAGGTGACTCAGTAGCTACCCAGT
GATATGGGGTGGAGAGAGAGAGAGTAGAGAAGGGGGGGGAGATCCCTCCC
TACTTTCCCTTCCTCCTTTCCTTCCCCCACATTCTTCTTTTTCCTTCCCC
TCTTCTTCTTTTTTTTCCCCCCCCTCTTTTCTCTCTCTTTTTCTCTCCCT
CTCCCACTACTTTCCTTCCTTCTTCTTTTTCTCCCTTTTTCCCCACCATT
TTTCTCTCTCCCTTTTCTTACTCCCTCTCCTCTCCTACCCATATTCATCC
CTTCTTTCCCTACTCCCATCTTCTTTCCTCTTCCCCCTCCCCCTTTCTTT
TCTTTCCCTTTCTTTTCTTCTTTTTTCCACCCTTCCCCACCTCCTTTCCT
TTTTTCCTTTCTTCCCTTCCTCTCCCTCGTCCCCCCCACTTTTTCCATCC
CCTCTTTCCTTTTTTTCTCCTTCTTTTCCCCTCCTCTTT
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCATCCAGAGCCTCCCAAAAG
GAGATGGCTCAGTGCACAAACGGTACTATTCCTACAACCTTGATGATCTG
ATTTTAATTGCAGGCAACACAGTGGTGGATCATCTGTAAGCCCAACACTC
CTATGGTAAGATAGGAGGTAGAGACGAAAGATACACCTGGAAGTTTATGG
GCTAGCCTAGAGTAATGGCTATAGCACTAGGAACAGCAAGATAGACCTGC
TTCAGCAAAGTGGAAGGAGACAGTCAATGTCTGAAAGTTGTCCTCTGACC
TCTGTACACACACACACATTCACACACACAACACTTACACACTTAACGTA
CACTCATACACATGCACTTCATACTCACATGCACAATACTCATACACATA
CACTCATACAATCACATAACACACATATACTCACATACTCATACACACAC
ACACTCACACACACTTATTCACACAAACACATACTCCCTCACTCATAATA
CATATATAAATACTTTTCTATAAAGTGGTCTTATTCTTCCAGGAACTTGA
CCCATATTTCTCCTTTGGCACATCATTCAAACCTGCTTTTGAAATCAGCT
CACTTTTGTTGGTATGATTCTCAGGCTCATCTAAGAATCAGCTTTCCCAA
TTTCTCTGTCTTCCTCTTTTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_h05.b1 MSMg01no147_h05.b1 CHROMAT_FILE:
MSMg01no147_h05.b1 PHD_FILE: MSMg01no147_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:03 2005
         (279 letters)



>mm_chr1_3084301_3084979
          Length = 679

 Score =  499 bits (258), Expect = e-146
 Identities = 271/276 (98%), Gaps = 4/276 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccacagtc--tctcgtttccttaaggtaagagggtgatggcttcagttcactcat 63
           |||||||||||||  | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaattccacagtcagt-t-gtttccttaaggtaagagggtgatggcttcagttcactcat 422

                                                                       
Query: 64  tcagtttttctgtcaatcacactgcaccagtccccttgctggaaacacagcagtgctaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcagtttttctgtcaatcacactgcaccagtccccttgctggaaacacagcagtgctaaa 362

                                                                       
Query: 124 atgtgacttctgtggctgtagaatttataaagaggagagacaaataatactatagtgtac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgtgacttctgtggctgtagaatttataaagaggagagacaaataatactatagtgtac 302

                                                                       
Query: 184 tgagcaactgagcacaggatggaacattcaactgtatgtcatgagtttacaggtgactca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgagcaactgagcacaggatggaacattcaactgtatgtcatgagtttacaggtgactca 242

                                               
Query: 244 gtagctacccagtgatatggggtggagagagagaga 279
           |||||||||||| |||||||||||||||||||||||
Sbjct: 241 gtagctacccagagatatggggtggagagagagaga 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)