Query= MSMg01no147_l17.b1 MSMg01no147_l17.b1 CHROMAT_FILE:
MSMg01no147_l17.b1 PHD_FILE: MSMg01no147_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:24 2005
(635 letters)
>mm_chr1_139602872_139603906
Length = 1035
Score = 1145 bits (592), Expect = 0.0
Identities = 604/608 (99%)
Strand = Plus / Minus
Query: 28 agctaatgctcctacaccatgcctgtctgcctgctgccatgctatggccatgttgctcag 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 agctaatgctcctacaccatgcctgtctgcctgctgccatgctatggccatgttgctcag 976
Query: 88 actcacactcaggaactctaagttccaacaaactctttctttgataagtcgccttagtca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 actcacactcaggaactctaagttccaacaaactctttctttgataagtcgccttagtca 916
Query: 148 tggtgtctcttcgctgcaatagaaaagtgactaacataagagttcatttgcttatagaga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 tggtgtctcttcgctgcaatagaaaagtgactaacataagagttcatttgcttatagaga 856
Query: 208 attttaaaataattataataccaccggctaaattcgttatactgtttctttaaccataac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 attttaaaataattataataccaccggctaaattcgttatactgtttctttaaccataac 796
Query: 268 aactatataattctaatagacgcatgatgaagtactcctagtgttagggtttcattactg 327
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aactgtataattctaatagacgcatgatgaagtactcctagtgttagggtttcattactg 736
Query: 328 aaactaacaccccagcaaatcagttgaaggggtggtgaaggacccatgggttctgagtgt 387
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaactaacatccgagcaaatcagttgaaggggtggtgaaggacccatgggttctgagtgt 676
Query: 388 cagaagtgtcggtctttcatggtggaaagagaatgaaggaacagagaagctctcacatca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cagaagtgtcggtctttcatggtggaaagagaatgaaggaacagagaagctctcacatca 616
Query: 448 tagcacccagggcatgagaggaagaaatctttattctctttattttcctctcactctaag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tagcacccagggcatgagaggaagaaatctttattctctttattttcctctcactctaag 556
Query: 508 caggctttcagcctgtgaggtgggtcttcctatccttgttatttctccagacatgccttc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caggctttcagcctgtgaggtgggtcttcctatccttgttatttctccagacatgccttc 496
Query: 568 atagccgcctctacgagtgagctgtacttatctactagccacttctccaaccccatcgac 627
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 495 atagccgcctctacgagtgagctgtacttatctactagccacttctccaagcccatcgac 436
Query: 628 ttgatata 635
||||||||
Sbjct: 435 ttgatata 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_l17.g1 MSMg01no147_l17.g1 CHROMAT_FILE:
MSMg01no147_l17.g1 PHD_FILE: MSMg01no147_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:24 2005
(559 letters)
>mm_chr1_139491537_139492502
Length = 966
Score = 938 bits (485), Expect = 0.0
Identities = 549/583 (94%), Gaps = 26/583 (4%)
Strand = Plus / Plus
Query: 1 agtttgcgaatattttattgagaatttttttctgtct--gttcattaagggtattggtct 58
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 200 agtttgcgaatattttattgagaatttttt-ctgtctatgttcattaagggtattggtct 258
Query: 59 gtagttttcatttttgtgatatgtctttgtgcagtttagggtattgttttagtttgattt 118
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 259 gtagttttcatttttgtgatatgtctttatgcagtttagggtattgttttagtttgattt 318
Query: 119 ctgttgctgtgataaacaacacagccaaaatcaacctgggggaaagaaagggttatttgg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctgttgctgtgataaacaacacagccaaaatcaacctgggggaaagaaagggttatttgg 378
Query: 179 cttccaactcctccttctcatccctcttccagctcttcccagatgctcccaactctctac 238
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 cttccaactcctccttctcatccctcttccaactcttcccagatgctcccaactctctac 438
Query: 239 ccaatcaatttctggttctgtttttctcagataaggaaaaaaaaaaaccactaacataca 298
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 439 ccaatcaatttctggttctgtttttctcagaaaaggaaaaaaaaaa-ccactaacataca 497
Query: 299 catatataataaaaccaacaccatca--------tcactggtcaaaacataaccacccct 350
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 498 catatacaataaaaccaacaccatcacaccatcatcactggtcaaaacataaccacccct 557
Query: 351 gcga-a-----------agagagagagagagagagagagagagagagagagagagagc-- 396
|||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcgagagagagagagagagagagagagagagagagagagagagagagagagagagagcgc 617
Query: 397 tcataaaagcacattattagaacacagagatcctatgttgtattccccaactacttttag 456
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcataaaagcacatcattagaacacagagatcctatgttgtattccccaactacttttag 677
Query: 457 gcacagagcctatcccggagtgtggttgatatgtgcaatgacacctcactcgaaaaaact 516
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcacagagccgaccccggagtgtggttgatatgtgcaatgacacctcactcgaaaaaact 737
Query: 517 atttttcctttcccagagagtatcaattgcaaatagcttctcg 559
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 738 atttttcctttcccagaaagtatcaattgcaaatagcttctcg 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 966
Length adjustment: 10
Effective length of query: 549
Effective length of database: 956
Effective search space: 524844
Effective search space used: 524844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
