Query= MSMg01no147_o04.b1 MSMg01no147_o04.b1 CHROMAT_FILE:
MSMg01no147_o04.b1 PHD_FILE: MSMg01no147_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:36 2005
(668 letters)
>mm_chr1_71439880_71440947
Length = 1068
Score = 1270 bits (657), Expect = 0.0
Identities = 663/665 (99%)
Strand = Plus / Plus
Query: 4 ggaattccaactgacccgagaggaagagagcagcgtgcgctatgacatttcttccacatg 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaactgaccagagaggaagagagcagcgtgcgctatgacatttcttccacatg 263
Query: 64 ggcgatttcgctctaaaaaatacacgggttcatttatcaaagacataggacattatgtga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggcgatttcgctctaaaaaatacacgggttcatttatcaaagacataggacattatgtga 323
Query: 124 cctaatcaaaaacaatgacaaacttaaacagcaagagtatcacggatgactaaagtctgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctaatcaaaaacaatgacaaacttaaacagcaagagtatcacggatgactaaagtctgg 383
Query: 184 taggccaggtttcctgagtgatgctgagaagtaagttttaatgaacaatcacttgggaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taggccaggtttcctgagtgatgctgagaagtaagttttaatgaacaatcacttgggaag 443
Query: 244 atgtggtcagccaactgtgtcactgagccctcatccgtgagcctggcggtccgggctgtc 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 atgtggtcagccaactgtgtcactgagccctcatccgtgagcctggcagtccgggctgtc 503
Query: 304 tgctccccagtaagtgaaggagaattaggtagattaatatccttaattctggatcttggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgctccccagtaagtgaaggagaattaggtagattaatatccttaattctggatcttggc 563
Query: 364 ttggagtggcaactgagattagcaacttcaggaagtgatgtgactactcttctaagagca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttggagtggcaactgagattagcaacttcaggaagtgatgtgactactcttctaagagca 623
Query: 424 tttaaaataattactcagttactcttgcctgtttctggtgtgagagtaacgggaggacct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttaaaataattactcagttactcttgcctgtttctggtgtgagagtaacgggaggacct 683
Query: 484 ctgccttttttgaagaaagaagaagataaaagaatgagaaagcaaagatgtgggtggctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctgccttttttgaagaaagaagaagataaaagaatgagaaagcaaagatgtgggtggctg 743
Query: 544 ccataccaaacttgagtggagcatgttggggagtttgtcaggcaaagctctcaaagtggg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccataccaaacttgagtggagcatgttggggagtttgtcaggcaaagctctcaaagtggg 803
Query: 604 ggtgatatggaatagatagagagtaaaaataagacaagcccattgatgcaattaacacct 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggtgatatggaatagatagagagtaaaaataagacaagcccattgatgcaattaacacct 863
Query: 664 attca 668
|||||
Sbjct: 864 attca 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_o04.g1 MSMg01no147_o04.g1 CHROMAT_FILE:
MSMg01no147_o04.g1 PHD_FILE: MSMg01no147_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:36 2005
(587 letters)
>mm_chr1_71538542_71539528
Length = 987
Score = 1098 bits (568), Expect = 0.0
Identities = 583/588 (99%), Gaps = 2/588 (0%)
Strand = Plus / Minus
Query: 1 tttgtgttcctttctc-tatggacatcaccctgtggtcccttggcttctcttaaaagtta 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttgtgttcctttctcatatggacatcaccctgtggtcccttggcttctcttaaaagtta 542
Query: 60 tttctgccgaagtcttctagaataggtaacagcggagcaacatttactcaaataaataaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 541 tttctgccgaagtcttctagaataggtaacagcggagcaacatttactcaaataaat-ga 483
Query: 120 acatttccagccacaacctgacactctctttctaccctgagacaacacctttggaggaaa 179
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 482 acatttccagtcacaacctgacactctctttctaccctgagataacacctttggaggaaa 423
Query: 180 caaatatgattctatttggttttaaaaagctggacaaaaatagatttgaagagtcacttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caaatatgattctatttggttttaaaaagctggacaaaaatagatttgaagagtcacttc 363
Query: 240 tgcttgttactgacagttgaatagacttccactctaaagcttgaagaaacggtggcttaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgcttgttactgacagttgaatagacttccactctaaagcttgaagaaacggtggcttaa 303
Query: 300 gatgtcttcttggtaaacaggtatttgatgtcactctgttccctgagatttatatgctaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gatgtcttcttggtaaacaggtatttgatgtcactctgttccctgagatttatatgctaa 243
Query: 360 aattttcctgaaaattgcaggaaataaaatagtgagtacggtgaggggggaacaggactg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aattttcctgaaaattgcaggaaataaaatagtgagtacggtgaggggggaacaggactg 183
Query: 420 aagccctgagggccagcagaatgaatggaaataggcaacctcgggaggtaggaggtgggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aagccctgagggccagcagaatgaatggaaataggcaacctcgggaggtaggaggtgggg 123
Query: 480 ggaccctccagaatgcaccagagactgggaggcgaaagactctcaggactcaaagggagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ggaccctccagaatgcaccagagactgggaggcgaaagactctcaggactcaaagggagg 63
Query: 540 gaccttagatgaaatgcccaacagtggggagagggaacttgtagagtc 587
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gaccttagatgaaatgcccaacagtggggagagggaacttgtagagtc 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
