Query= MSMg01no147_o14.b1 MSMg01no147_o14.b1 CHROMAT_FILE:
MSMg01no147_o14.b1 PHD_FILE: MSMg01no147_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:38 2005
(642 letters)
>mm_chr1_45880328_45881369
Length = 1042
Score = 1120 bits (579), Expect = 0.0
Identities = 624/639 (97%), Gaps = 3/639 (0%)
Strand = Plus / Plus
Query: 6 ggaattcttctttcttgatccccaaatcactaggatgat-ggcctgttactcaggtctgt 64
|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 205 ggaattcttctttcttgacccccaaatcaccaggatgataggcctgttactcaggtctgc 264
Query: 65 tcaaacgtgtttacttgtgtagattttttttattttctgtgtatgaatgttttccttgaa 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaaacgtgtttacttgtgtaga-tttttttattttctgtgtatgaatgttttccttgaa 323
Query: 125 tg-atatatatgtaccactagctacgctggtgcctgctaaaatctgaaaagggcatcaag 183
|| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 tgtatatatatgtaccactggctacgctggtgcctgccaaaatctgaaaagggcatcaag 383
Query: 184 cccctggaactagttacccgtgactatgagccatcgtaagagtgctggccagtcttttta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccctggaactagttacccgtgactatgagccatcgtaagagtgctggccagtcttttta 443
Query: 244 agaaagctctgtaaagctctgcttttgtcagaccttataagcagttatggagcatatgca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaaagctctgtaaagctctgcttttgtcagaccttataagcagttatggagcatatgca 503
Query: 304 tttgtcacatatggatttctattttgaattacaaagaaaccttgtttctggtaggttttg 363
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 tttgtcacatatggatttctattttgaattacaaagaaactttgtttctggtaggttttg 563
Query: 364 ttgtgacacacctgactgtagttgacaaatatacccttatctttaatttgaaggtataaa 423
|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgtgacagagctgactatagttgacaaatatacccttatctttaatttgaaggtataaa 623
Query: 424 aagatttcaaaagtttagaggctttaccaataatgatgcacagaattattctcacaccag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagatttcaaaagtttagaggctttaccaataatgatgcacagaattattctcacaccag 683
Query: 484 acatgatttctttctggttatatttcccagcctttgccactataagacaaaagtataagc 543
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 684 acatgatttctttctggttatatttcccagcctttgccactataggacaagagtataagc 743
Query: 544 aacattatgttaatagtagcacaaatggactatattctaatcaacactaaatatcaactg 603
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aacattgtgttaatagtagcacaaatggactatattctaatcaacactaaatatcaactg 803
Query: 604 tactgagatgtaacttctaactcatgcatataaagtgca 642
|||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tactgagatgtaacttctaactcatgcatataaagtgca 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_o14.g1 MSMg01no147_o14.g1 CHROMAT_FILE:
MSMg01no147_o14.g1 PHD_FILE: MSMg01no147_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:38 2005
(587 letters)
>mm_chr1_45992532_45993518
Length = 987
Score = 880 bits (455), Expect = 0.0
Identities = 467/471 (99%)
Strand = Plus / Minus
Query: 117 aacctctctaagagcaatacaaagctatccaaattttagtcttgctgttcatccattcag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aacctctctaagagcaatacaaagctatccaaattttagtcttgctgttcatccattcag 728
Query: 177 tctccctcagtcagaaaagacatataaagacaaaagacaaaaagcttgctcgatcctttt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tctccctcagtcagaaaagacatataaagacaaaagacaaaaagcttgctcgatcctttt 668
Query: 237 tcctcgttgccattcactatggacctctgaaggattgaaggcatgcccctgggccttcaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tcctcgttgccattcactatggacctctgaaggattgaaggcatgcccctgggccttcaa 608
Query: 297 ttagtatatccaagtatgcaacccctaggttagctcagcctttgatgggccccaaagtaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttagtatatccaagtatgcaacccctaggttagctcagcctttgatgggccccaaagtaa 548
Query: 357 aggattcggtggacaattcatcttgctggggtctccaatgttaatcctcagatatgctag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aggattcggtggacaattcatcttgctggggtctccaatgttaatcctcagatatgctag 488
Query: 417 agaaaaaaatagttccacagctttgagccaacattgaagcaagctttaattcaatactgg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agaaaaaaatagttccacagctttgagccaacattgaagcaagctttaattcaatactgg 428
Query: 477 tgaggaaggactcaggccaggtctaccccttggtttctggggaatagccatgagtcataa 536
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 427 tgaggaaggactcaggccaggtctaccccttggtttccagggaatagccatgagtcataa 368
Query: 537 ttcacaggagtttaaaagggtgaaacccataattcattgttttttttatca 587
||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 367 ttcacaggagtttaaaaaggtgaaacccataattcattgtttttcttatca 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
