Query= MSMg01no147_o17.b1 MSMg01no147_o17.b1 CHROMAT_FILE:
MSMg01no147_o17.b1 PHD_FILE: MSMg01no147_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:39 2005
(544 letters)
>mm_chr1_126306838_126307781
Length = 944
Score = 876 bits (453), Expect = 0.0
Identities = 471/477 (98%), Gaps = 1/477 (0%)
Strand = Plus / Minus
Query: 4 gaattccagaatatatctgataactcctgtgcttccattttggttttggtattttcctcc 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaattccagaatataactgataactcctgtgcttccattttggttttggtattttcctcc 417
Query: 64 cagtgatctaagtacttcttaaaagattatattatcataaatcttactatgctctttttc 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 416 cagtgatctaagtacttcttaaaggattatattatcataaatcttactatgctctttttc 357
Query: 124 tgaaagagaactttagaaaaataatggatcctgtaaaaaataacatcaacagaggtcttt 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 356 tgaaagagaactttagaaaaataatggatcctgtaaaaaatagcatcaacagaggtcttt 297
Query: 184 ttggtttcagtattcttctgacttgtgagtagcagcagttggatttctatgttactgtgg 243
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttggtttcagtattcttctgatttgtgagtagcagcagttggatttctatgttactgtgg 237
Query: 244 tttaactgttagtgactgttgagacctcagataacccctgtggtcttcagtatcctcaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tttaactgttagtgactgttgagacctcagataacccctgtggtcttcagtatcctcaat 177
Query: 304 gataaaatgagagggatgggctaagcctccccccaaagctctttgtagctccccatgtgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 176 gataaaatgagagggatgggctaagcctccccccaaagctctttgtagctccccacgtgg 117
Query: 364 tgattatctgtgtatagtatcccttgaaacttcattagaaataaaaataaaaccgattaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tgattatctgtgtatagtatcccttgaaacttcattagaaataaaaataaaaccgattaa 57
Query: 424 cttgaaaatgttccaacagtcacaaaagagatgtttgacattataatcaggaacctt 480
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 56 cttgaaaatgttccaacagtcac-aaagagatgtttgacattataatcaggaacctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_o17.g1 MSMg01no147_o17.g1 CHROMAT_FILE:
MSMg01no147_o17.g1 PHD_FILE: MSMg01no147_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:39 2005
(487 letters)
>mm_chr1_126223665_126224551
Length = 887
Score = 851 bits (440), Expect = 0.0
Identities = 472/488 (96%), Gaps = 14/488 (2%)
Strand = Plus / Plus
Query: 1 actctgtagaccaggctggcttttaattcactaagatctgcctttccctctgcctctacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 213 actctgtagaccaggctggcttttaattcactaagatctgcctttccctctgcct-t--- 268
Query: 61 tccacctccacctccacctctacctctttttctgcctctgcctccgcctccgcctctggc 120
| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 269 t--acctccacctccacctctacctctttttctgcctct------gcctccgcctctggc 320
Query: 121 aagtgctgagataaaaggcaagtgccaccactaccagcttctcctcttacttttaattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgctgagataaaaggcaagtgccaccactaccagcttctcctcttacttttaattaa 380
Query: 181 tgtttcattgcacctaattctctttggtttgagttttttttaatttaactatgtgtatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttcattgcacctaattctctttggtttgagttttttttaatttaactatgtgtatat 440
Query: 241 atgtgcatttctgaacgtacacatttgcatgttggatgcaactactatggaaatgagagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgcatttctgaacgtacacatttgcatgttggatgcaactactatggaaatgagagt 500
Query: 301 agtgttaaattccctggagtgggtgatgggaaccaaacttaggtcctctgaagaacagtt 360
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 agtgttaaattcc-tggagtgggtgatgggaaccaaacttgggtcctctgaagaacagtt 559
Query: 361 tgaaatattagacattgaaacacctctccagcccctgggttctgagttttaaactttatt 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgaaatagtagacattgaaacacctctccagcccctgggttctgagttttaaactttatt 619
Query: 421 ttttttt-attttctttagacatttactttattatttatttcattaaatattagttacag 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttttttttattttctttagacatttactttattatttatttcattaaatattagttacag 679
Query: 480 ataatgcc 487
||||||||
Sbjct: 680 ataatgcc 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
