BAC Information

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BAC

Clone NameMSMg01-148B16
Chromosome1 (Build37)
Map Location 113,557,117 - 113,557,438
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148B16.T7 (MSMg01no148_b16.b1)MSMg01-148B16.TJ (MSMg01no148_b16.g1)
ACCAG351201AG351202
length709711
length of high quality
(start - end)
378 (49 - 426)347 (72 - 418)
definitionCHROMAT_FILE: MSMg01no148_b16.b1 PHD_FILE: MSMg01no148_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:54 2005CHROMAT_FILE: MSMg01no148_b16.g1 PHD_FILE: MSMg01no148_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCG
CGGAATTCTCAACTGATTATCCTTGAAGGGCTCAGAAACACCTAGAGAAA
TATTCAATATCTTTAGTCATCAGGGAAATGCAAAGCAAAACAACCCTGAG
ATTCAAACTTACATCAGTCAGAATGGCTAAGATCAAAAACTCTGGTGACT
GCAGATGTTGGTGAAGATGTAGAGAAAGAGGAACACTCCTCCATTGCTTG
TGGGATTGCAAGTTGATATAACCACTCTGGAAATCAGTTTCACAGTTCCT
CAGAAATTTGGACATAGTACTACCAAAGGACTTAGCTATAGCACTCCTGG
GCTATACCCAGAAGATGCTGCAACATGTAATAGGGACACATGCTCCACTA
TGTTCATAGCAGTCATATTTATACCCCCCCCACGGTAGAAACAACCCAGA
TGTCCTGCAACAGAGAAATGGATACAGAAAATGTGGCACATTTACACAAT
GGAGTAATACTCAGCTAAAAACAAACATGGCATGTACTAAATGATAAGTG
GATATTAGCCCAAAATTAAATTCACAGACCATATGTTGCCTTAGAAGAAG
GAAGACCAAAATGTGGATACTTCAATGTTTTTTAGAAGGATGAACAAAAT
ACTCACAGGAGGAAATATGAAGACAACTTGTGGAACAGAGACTGAAGGAA
AGGTCATCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTCACCCCACAGGGTTCTCCTTTCATA
AGAAAGAAAAGAAGAGAAAGAAAAGGAAAGAAAACACAAAAGAAAAAAGC
TAATTATTAGCGACAAGAAGGAATCTAAATGTAGCCCTTACAGTAAGTTT
TACATTTGTCTAATTTCTATTTAATTCCTCTCATCTTTAGCAAACAAACA
GATAATAAACATAATTCAAAGGTTGAAATTTCTGTTATTTTAAATCTATC
ACTACATTGAATTTTTTCGATAATGAATCTAGAAAAGAAAAATTGATATA
ATTATGCTTCTATAAATGTTTGTTTTAAATATGTATTTAGGATTTCAAAA
CACATTTCTATATTTTCCCCCCACCTCTCTCTCTCTCTCTTTTTCTCTTA
TTAGAAAGTAAAAGAGAACAAAGAAACAAAACCCACCTCCTCAGCTAAGT
GGTGAGAACAAACCTAACTCTAGAATTCAAACTTAGAAGGATCTACTTTT
TAAGCTGTTTTACATTATTAAAAACGCTCTCAATCACTGGTCTACCAACC
AGGCAGCATACACCAGCTGATATGAGGTCCTCAACACATATACAGCAGAT
ACATACATATACCTGGTCTGGGTTCAGTCAGAGAAGATGCACCCAACCCT
CAAGAGAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_b16.g1 MSMg01no148_b16.g1 CHROMAT_FILE:
MSMg01no148_b16.g1 PHD_FILE: MSMg01no148_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:54 2005
         (347 letters)



>mm_chr1_113556892_113557638
          Length = 747

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 26  cataagaaagaaaagaagagaaagaaaaggaaagaaaacacaaaagaaaaaagctaatta 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cataagaaagaaaagaagagaaagaaaaggaaagaaaacacaaaagaaaaaagctaatta 285

                                                                       
Query: 86  ttagcgacaagaaggaatctaaatgtagcccttacagtaagttttacatttgtctaattt 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttagcgacaagaaggaatctaaatgtagcccttacagtaagttttacatttgtctaattt 345

                                                                       
Query: 146 ctatttaattcctctcatctttagcaaacaaacagataataaacataattcaaaggttga 205
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 346 ctatttaattcctctcatctttagcaaataaacagataataaacataattcaaaggttga 405

                                                                       
Query: 206 aatttctgttattttaaatctatcactacattgaattttttcgataatgaatctagaaaa 265
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aatttccgttattttaaatctatcactacattgaattttttcgataatgaatctagaaaa 465

                                                                       
Query: 266 gaaaaattgatataattatgcttctataaatgtttgttttaaatatgtatttaggatttc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gaaaaattgatataattatgcttctataaatgtttgttttaaatatgtatttaggatttc 525

                                 
Query: 326 aaaacacatttctatattttcc 347
           ||||||||||||||||||||||
Sbjct: 526 aaaacacatttctatattttcc 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)