Query= MSMg01no148_n06.b1 MSMg01no148_n06.b1 CHROMAT_FILE:
MSMg01no148_n06.b1 PHD_FILE: MSMg01no148_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:51 2005
(571 letters)
>mm_chr1_136295406_136296376
Length = 971
Score = 808 bits (418), Expect = 0.0
Identities = 439/446 (98%), Gaps = 2/446 (0%)
Strand = Plus / Minus
Query: 1 acaatgatgccttggtttccaggcaactgtgagtgacccaatgaagactgtgttttcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaatgatgccttggtttccaggcaactgtgagtgacccaatgaagactgtgttttcttt 386
Query: 61 ttctccactggctgaaaagtgtccctcagatctgggtacattcttatcagaattttcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctccactggctgaaaagtgtccctcagatctgggtacattcttatcagaattttcaga 326
Query: 121 gcagctaggacactgtccaagagaaagtccgagtgtgatagggcgtggtaaagtgcgcat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 gcagctaggacactgtccaagagaaagtccgagtgtgatagggcgtggtaaagtgcacat 266
Query: 181 caatgtacagaaagttgaaagggggaggggcacagacctcttcctttcttaaaattttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatgtacagaaagttgaaagggggaggggcacagacctcttcctttcttaaaattttaa 206
Query: 241 ataatttcctattttatgtgtgtgaatgtattgcatgtatgtacgaatgtatgtgtatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ataatttcctattttatgtgtgtgaatgtattgcatgtatgtacgaatgtatgtgtatgc 146
Query: 301 c-tgtgcccaaagaggtcagaagaactgcaattgccaatgattggaaatcacctgcccaa 359
| |||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||
Sbjct: 145 cttgtgcccaaagaggtcagaagaactgcaattgcc-atgattggaagtcacctggccaa 87
Query: 360 gaattcatgatcctttcgcctctgcctcttcagcatatcctattggtgtgtaccaccaca 419
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 86 gaattcatgatcctctcgcctctgcctcttcagcatatcctattggtgtgcaccaccaca 27
Query: 420 accagccttcttcctttcattttggg 445
||||||||||||||||||||||||||
Sbjct: 26 accagccttcttcctttcattttggg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_n06.g1 MSMg01no148_n06.g1 CHROMAT_FILE:
MSMg01no148_n06.g1 PHD_FILE: MSMg01no148_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:51 2005
(596 letters)
>mm_chr1_136209672_136210671
Length = 1000
Score = 978 bits (506), Expect = 0.0
Identities = 578/618 (93%), Gaps = 28/618 (4%)
Strand = Plus / Plus
Query: 1 ttctgctctatgcctgaagcaatatgaaacttcaaagtgggtcaggaaacaccctgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgctctatgcctgaagcaatatgaaacttcaaagtgggtcaggaaacaccctgcatg 260
Query: 61 cccacagtgtcctcacacctcacacacactgacttaggcatctccatgtgccctgcaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccacagtgtcctcacacctcacacacactgacttaggcatctccatgtgccctgcaaga 320
Query: 121 gaaccataggccccggattactctcccacagccttcctgattcctgttccctgggatcat 180
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gaaccataggccccagattactctcccacagccttcctgattcctgttccccgggatcat 380
Query: 181 cctgaggcctcgttctcaactcgggactgc----tcaggtgtgccccg-atggaccaagt 235
|||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct: 381 cctgaggcctcgatctcaactcgggactgctcgttcaggtgtg-cccgcatggaccaagt 439
Query: 236 cttgctggactctatctctctgagctcaaaatggggggaggaaaagcagctgggggcccg 295
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttgccggactctatctctctgagctcaaaatggggggaggaaaagcagctgggggcccg 499
Query: 296 ggccaccctagtagcaccttggtccgaggctcttacttctttttcagtcgccggcccttc 355
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 500 ggccaccctagtagcaccttggtccaaggctcttacttctttttcagtcgccggtccttc 559
Query: 356 tctgcctgggtccccaacttggcaggtaccattggttcctgcagactgagctcggagtct 415
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctgcctgggtccccaacttagcaggtaccattggttcctgcagactgagctcggagtct 619
Query: 416 gtgagcagaactggaaaggaagacacggatatgtcagcagcccttctgcttctgccttgg 475
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 620 gtgagcagaactggaaatgaagacacagatatgtcagcagcccttctgcttctgccttgg 679
Query: 476 cctggacctagaaaacaaagcagcagcagaaggcaccttctacacacacacacacacaca 535
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cctggacctagaaaatgaagcagcagcagaaggcaccttctacacacacacacacacaca 739
Query: 536 cacacaca----------------------gagcaacccaagcaaagctgacaggtcccc 573
|||||||| |||||||||||||||||||||| |||||||
Sbjct: 740 cacacacacacacacacacacacacacacagagcaacccaagcaaagctgacgggtcccc 799
Query: 574 atctcattcccagggcta 591
||||||||||||||||||
Sbjct: 800 atctcattcccagggcta 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1000
Length adjustment: 10
Effective length of query: 586
Effective length of database: 990
Effective search space: 580140
Effective search space used: 580140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
