BAC Information

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BAC

Clone NameMSMg01-149B03
Chromosome1 (Build37)
Map Location 156,345,330 - 156,345,788
singlet/doubletsinglet
Overlap geneCacna1e
Upstream geneNpl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149B03.T7 (MSMg01no149_b03.b1)MSMg01-149B03.TJ (MSMg01no149_b03.g1)
ACCAG351893AG351894
length697690
length of high quality
(start - end)
500 (45 - 544)459 (73 - 531)
definitionCHROMAT_FILE: MSMg01no149_b03.b1 PHD_FILE: MSMg01no149_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:12 2005CHROMAT_FILE: MSMg01no149_b03.g1 PHD_FILE: MSMg01no149_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCGCGG
AATTCTTTGTTCAGCTCTGAGCCCCATTTTTTTTTCCATTTTTTATTAGG
TATTTCGCTCATTTACATTTGCAATGCTATACCAAAAGTCCCCTATAGCC
ACCCACCCCCTCTCCCCTACCCACCCACTCCCCTTTTATGGCCCTGGCGT
TCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTT
CCAGTGATGGCTGACTAGGCCAACTTTTGATGCATATGCAGCTAGAGTCA
AGAGCTCCGGGGTGCTGGTTAGCTCATAATGTTGTTCCACCTATAGGGTT
GCAGATCCCTTTAGCTTCTTTGGTACTTTCTCTAGCTCCTTCATTGGGGG
CCATGTGATCCATCCAATAGCCGACTGTGAGCATCCACTTCTATGTTTGC
TAGGCCCAGGCATACTCTGACAAGAGACAGCTATATTCTGGGTCTTCAAT
TCTATTCCATGGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTT
TTATCACAATTGCTCTGTAGTACAGCTTTAGGTCAGGGCATGCTGAATCC
CCCCACAGGTTCTTTTATCCCTTGACGAAAAGTTTTTGCTACCCTCCACT
TTTTGTTACTCCAGAATTAACCCTGCCGATTGACCTTTCTAATTTCT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTATACAGAGGAAACAATACTTAGATTC
TTATGGGAAAAGACCACAGAAAGAACATGCTGCCCTTTCTCAGGCCTAGC
CACCTAAATGCTTAGGGTCTGATGGACATGTACGATCTAAGGATCGAATG
GCTACTTATTTCTGGCAAATAGTGGAGATAATATTATTTACCCCTTTCCC
TTGTAAATTCAATATGAATACATGGTAACAATGGCCTGAACACAGGATGG
CAAATATAACAGCAGTCTGACTAGTGCTGTGAATTATTTTCTGGGTCTTT
TATTAATCCAACATAGGAATTAATTAACCTCTATTCTGTTGTCTCAAATG
AAAAGCTCACTAAAAACAAAACAAACTAACGAAACTGTTCTCATATTTCT
ACATTTCTCAAATTTGAGCTAAAACAAAAATCCAGTCTGTAGATTTTAAT
CATTGACTTCTCACAGCAAGGGAAGAGGGGGAGACAGCTTAGGCACTGTG
GGAACTGTAACTAACCCGAAATGGAAGGTGCTACTTTGAATTCCAACTCT
TTCTCTTTGTGATCTTGGGCAAATAGCCTTTCTACACCTTTTCAGGTTTT
GTTTACCAGGGTTGTTTGTTTGTTTTACAACAATAACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_b03.g1 MSMg01no149_b03.g1 CHROMAT_FILE:
MSMg01no149_b03.g1 PHD_FILE: MSMg01no149_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:12 2005
         (459 letters)



>mm_chr1_156345130_156345988
          Length = 859

 Score =  888 bits (459), Expect = 0.0
 Identities = 459/459 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatacagaggaaacaatacttagattcttatgggaaaagaccacagaaagaacatgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttatacagaggaaacaatacttagattcttatgggaaaagaccacagaaagaacatgctg 600

                                                                       
Query: 61  ccctttctcaggcctagccacctaaatgcttagggtctgatggacatgtacgatctaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ccctttctcaggcctagccacctaaatgcttagggtctgatggacatgtacgatctaagg 540

                                                                       
Query: 121 atcgaatggctacttatttctggcaaatagtggagataatattatttacccctttccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atcgaatggctacttatttctggcaaatagtggagataatattatttacccctttccctt 480

                                                                       
Query: 181 gtaaattcaatatgaatacatggtaacaatggcctgaacacaggatggcaaatataacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtaaattcaatatgaatacatggtaacaatggcctgaacacaggatggcaaatataacag 420

                                                                       
Query: 241 cagtctgactagtgctgtgaattattttctgggtcttttattaatccaacataggaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cagtctgactagtgctgtgaattattttctgggtcttttattaatccaacataggaatta 360

                                                                       
Query: 301 attaacctctattctgttgtctcaaatgaaaagctcactaaaaacaaaacaaactaacga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 attaacctctattctgttgtctcaaatgaaaagctcactaaaaacaaaacaaactaacga 300

                                                                       
Query: 361 aactgttctcatatttctacatttctcaaatttgagctaaaacaaaaatccagtctgtag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aactgttctcatatttctacatttctcaaatttgagctaaaacaaaaatccagtctgtag 240

                                                  
Query: 421 attttaatcattgacttctcacagcaagggaagaggggg 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 attttaatcattgacttctcacagcaagggaagaggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)