BAC Information

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BAC

Clone NameMSMg01-149G21
Chromosome1 (Build37)
Map Location 150,235,777 - 150,236,095
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149G21.T7 (MSMg01no149_g21.b1)MSMg01-149G21.TJ (MSMg01no149_g21.g1)
ACCAG352150AG352151
length721725
length of high quality
(start - end)
331 (45 - 375)543 (70 - 612)
definitionCHROMAT_FILE: MSMg01no149_g21.b1 PHD_FILE: MSMg01no149_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:41 2005CHROMAT_FILE: MSMg01no149_g21.g1 PHD_FILE: MSMg01no149_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACGCGGAATT
CCTACTATTTATATCTATGCTTGATTCAAATCCATCCCTCTTTCCTACTC
CTCCAGATGCCCCTGTATACCATGTTTTTTTCTCCGCATCATGTGCTCTC
CTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTGTCTGTCTCTCTCTCTCTCTCAATTTTTATTATTTTCTTTA
TTTAGATTTCAAAATTTATTCCCTTTCCTGGATTCCCCTCCAGAAACCCC
CTACCCCATCTTCCCTCCCCCTGTCTACTAACCCACCCACTCCTGCTTCC
CTGTCCTGTCATTCTTGTATACTGGGGCATGGAGTCTTCACAGGACCAAG
AGCCTTTCCTTCTACTGATAACCAACAAGGCCATCCTCTGCTACATATGA
GGCTAGAGATATGGGTTCCTCCATGTGTACTCATTGGTTGGTGGATGAGT
CCCTGAAAGCTCTGCGGGAACTGGAAGGCTCATATTTTTGTTCCTCCTAT
GTGGATGCAATCCCCTTCAGCTCCATAGGTACTTTCTCTAACATTGCACA
ATGGAGGTATTGAAAAACCTGTGCTCTCCTCAATGGATCGCTGAGAGCAT
ACCCTTCTTTATTTGTTAATCAATAATACAGTCTCTCAAGAAATAAATAA
ACCATGCTCCTGTCAATAAAA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGCCTCAATTCTCACCTGAGGAATACCGAATGGCTGAGA
AGTACCTGAAAAAATTTTCGGCATCCTTAATCATCAGAGAAATGCAAATC
AAAACAACACTGGGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACAC
TCCTCCCTTGTTGGTGGGATTACAAGCTTATACAACCACTCTGGAAATCA
GTCTGGTGGTTCCTCAGAAAATTGGACATATTACTACCGGAGGATCCCTC
AATACCCCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGCAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAAAAGG
TGTAAAGAATCCAGATGCTCCTCAACAGAGGAATGGATATGGAAATTGTG
GTACATTTACACAATGGAGTACTCCTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGGCAAATGGATGGACATGGAGGGCATCATCCTGAGTGAG
GTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGG
ATATTAGCCCAGAAACTTAGTATACCTGAGATATAAGATAAAATTTGCAA
AACATATGATACTGAAGAAGAACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_g21.b1 MSMg01no149_g21.b1 CHROMAT_FILE:
MSMg01no149_g21.b1 PHD_FILE: MSMg01no149_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:41 2005
         (331 letters)



>mm_chr1_150235576_150236307
          Length = 732

 Score =  543 bits (281), Expect = e-159
 Identities = 313/331 (94%), Gaps = 13/331 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattcctactatttatatc-tatgcttgattcaaatccatccctctttcctactcctcc 60
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcctactatttatataatatgcttgattcaaatccatccctctttcctactcctcc 261

                                                                       
Query: 61  agatgcccctgtataccatgtttttttctccgcatcatgtgctctcctgttctctctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agatgcccctgtataccatgtttttttctccgcatcatgtgctctcctgttctctctctc 321

                                                                       
Query: 121 tctctctctctctctctctctctctctctctctctctctctctctgtctgtctctctctc 180
           |||||||||||||||||||||||||||||||||||||||||||||            |||
Sbjct: 322 tctctctctctctctctctctctctctctctctctctctctctct------------ctc 369

                                                                       
Query: 181 tctctcaatttttattattttctttatttagatttcaaaatttattccctttcctggatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 370 tctctcaatttttattattttctttatttagatttcaaaatttattccctttcctggttt 429

                                                                       
Query: 241 cccctccagaaaccccctaccccatcttccctccccctgtctactaacccacccactcct 300
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 430 cccctccagaaaccccctaccccatcttccctccccctgcccactaacccacccactcct 489

                                          
Query: 301 gcttccctgtcctgtcattcttgtatactgg 331
           ||||||||||||||||||| |||||||||||
Sbjct: 490 gcttccctgtcctgtcattgttgtatactgg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space:   232806
Effective search space used:   232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)