Query= MSMg01no149_k10.b1 MSMg01no149_k10.b1 CHROMAT_FILE:
MSMg01no149_k10.b1 PHD_FILE: MSMg01no149_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:59 2005
(525 letters)
>mm_chr1_181238998_181239922
Length = 925
Score = 986 bits (510), Expect = 0.0
Identities = 519/522 (99%)
Strand = Plus / Minus
Query: 4 ggaattccaggcatatcagaggcctactgtaagggtagctttttgtgtctgacgatgaac 63
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggaattccaggcaaatgtgaggcctactgtaagggtagctttttgtgtctgacgatgaac 666
Query: 64 ttgtacccactcacttttgttgcccccggtttgataaactacttagctatctattcgatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttgtacccactcacttttgttgcccccggtttgataaactacttagctatctattcgatg 606
Query: 124 acttcaccatcacaggcattttgacttttggctcaaagcagagcctcggtatgaacttag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 acttcaccatcacaggcattttgacttttggctcaaagcagagcctcggtatgaacttag 546
Query: 184 ttttgctgtagttcagggagccagatttcatacagtcagtttccaggaaactgtaaggat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttttgctgtagttcagggagccagatttcatacagtcagtttccaggaaactgtaaggat 486
Query: 244 agtgatatgtgtgtagcagtttgtcttttttcttttttaatccacatctttgccaggaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtgatatgtgtgtagcagtttgtcttttttcttttttaatccacatctttgccaggaga 426
Query: 304 gtttgctgtgtaataaaaaggtgagagtctatagctgtctgtgtgccaagcctagtgtag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtttgctgtgtaataaaaaggtgagagtctatagctgtctgtgtgccaagcctagtgtag 366
Query: 364 atgattcggtgctcgaggtagctggtagctgcaagagagcctatgcaaagagctgtgtgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atgattcggtgctcgaggtagctggtagctgcaagagagcctatgcaaagagctgtgtgt 306
Query: 424 agtactcctcactgttcctgaggggtcagatgcaagtctatagtcctgtttgtggaaatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agtactcctcactgttcctgaggggtcagatgcaagtctatagtcctgtttgtggaaatt 246
Query: 484 ctctgaagagaggaacagctcctgggttgtcggtgtcctgta 525
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctctgaagagaggaacagctcctgggttgtcggtgtcctgta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_k10.g1 MSMg01no149_k10.g1 CHROMAT_FILE:
MSMg01no149_k10.g1 PHD_FILE: MSMg01no149_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:00 2005
(538 letters)
>mm_chr1_181150196_181151133
Length = 938
Score = 973 bits (503), Expect = 0.0
Identities = 522/529 (98%), Gaps = 2/529 (0%)
Strand = Plus / Plus
Query: 1 tgactaagctaaactaacaagtttcttgctggagacaggctgcatgacactgggcacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactaagctaaactaacaagtttcttgctggagacaggctgcatgacactgggcacaac 260
Query: 61 agaagattaatcacctgtcagacaccaagggtgaccagacatggagaacaggcaacaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagattaatcacctgtcagacaccaagggtgaccagacatggagaacaggcaacaggg 320
Query: 121 gcttcttcataaagggaatggggaatattctagtgagaactagattttaaaaaggaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcttcataaagggaatggggaatattctagtgagaactagattttaaaaaggaaggt 380
Query: 181 ggtacctttaacaggcagtacaggcctataacccatcactaggaggccggggaaggagaa 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ggtacctttaacaggcagtacaggcctataacccaccactaggaggccggggaaggagaa 440
Query: 241 taatgaatgtgagaccagcctgggctgtagagtaaaaccctgtctcaaaacaaacaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatgaatgtgagaccagcctgggctgtagagtaaaaccctgtctcaaaacaaacaacaa 500
Query: 301 cctaaactaaaacctgcatgcactccagaaggaagtaaacagctgagccttgctaaaaag 360
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct: 501 cctaaactaaaacctgcatgcactccagaaggaagtgaacagctgagccttgataaagag 560
Query: 361 aatgctcaaaaagcataaacagagggcttggacaaggaaagaattcaccactacatctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgctcaaaaagcataaacagagggcttggacaaggaaagaattcaccactacatctca 620
Query: 421 aagcatgagcttcccctgctgaagtttagggcatctcatacatgcacgcgcgcgtgtgcg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcatgagcttcccctgctgaagtttagggcatctcatacatgcacgcgcgcgtgtgca 680
Query: 481 cacacacacacacacacacacacacacacacacacac--ggggaggggg 527
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 cacacacacacacacacacacacacacacacacacacacggggaggggg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
