BAC Information

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BAC

Clone NameMSMg01-150E21
Chromosome1 (Build37)
Map Location 147,521,969 - 147,522,526
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs18, LOC667877, LOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150E21.T7 (MSMg01no150_e21.b1)MSMg01-150E21.TJ (MSMg01no150_e21.g1)
ACCAG352781AG352782
length738739
length of high quality
(start - end)
555 (37 - 591)535 (75 - 609)
definitionCHROMAT_FILE: MSMg01no150_e21.b1 PHD_FILE: MSMg01no150_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:50 2005CHROMAT_FILE: MSMg01no150_e21.g1 PHD_FILE: MSMg01no150_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAATG
AAGAGAAAAAAATCAAAGTTAAATAAATCGAAGTTAAGTTTGATCATAAA
AACTATCTAGAGACAAAGAAGACATTGATATCAAGATGGGAAAGTATCAT
GCAGCTCTGACAATCATCATTAGCAAAGAAGGAATATCAGAACTTTTGAT
GATGCATTTAATGATGTGTAATTTTTGAACTCTAACAAACAATTGTGAAT
AATCACAGGCAAGGAAAAGGAAGGTTTAACTCAATCACATGACAGGTTCC
AATCTCCTATGTGACATCTGCTTAAAGCTTAGCCATGGAAAGCTACTTAC
TCACCCCACTTCCATTGTTAGAGTTACACTGGAAATACTAATAGTGTCTA
GATCAGAACACTGTTGTAGGAACTAAACGGCCAAGTGCGTGATTAATTTT
GGTTCTCTCCTGTTGCCTTAAGAAATCACAACTGTTTTAACAGGTTAAAA
TATTATTGATTTATTCTTTTCAGCTTTGTAGAACGAAGTCAAGGTAAAGT
GGTCTCTGCAGGCTCACTGCTTTCTTCTAAAAAGGCTGACATCAAATGTG
GGAGGAGTTTATGTTCTCTGCTATAAGCTGAAGGGATGAATACACCTCCC
AACTCATTCAGATTGTTAGCAGACTCCTCTTCACTGTAGATGGACACACC
AGGCCTTCCTTACTAACCATCCATGGAAGGTCTTTCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTT
AATGGGGTTATTTGATTTTCTGGATCCACCTTCTTGAGTTCTTAAGCTTC
GAAGATATGGGTACAGGGGGGAAATTCCTGAATAGAACAGCAATGGCTTG
TGCTGTAAGATCGAGAATCTACAAATGGGACTTCATAAAATTGCAAAGCT
TCTGCAAGGCAAAAGACACAGTCAATAAGACAAAAAGGCCATCAACAGAT
TGGAAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAGTTCCTT
CCATTCTTAACTCTAGAGCCAGAGCCACATGGCTGAAGCTGCTAACTTCT
GCTGCTTGCAGTAACTAGAACATGACCCACTTGCACTATTACATTGTCAC
TGGCTTTCTGTTTTCCAAATCCTTCACTGCCTAAACTTGGCTATCCTGGG
TCTTGCTCTGTAGATTGGCCTTGAATGCAGAGATCATCATGCCTGTCTCC
TGGGATTAAAGGTGTTTGCCACCATGCCTGGATCTAAATTTAGCTGGGTA
GGATCTTGCTCCAAGGCCCCACTCCCTTAATCTGTTATCTCCTAGAACAC
AGGATTTTGCTCCATTTCACTTCCTGGNACCCCTTTAATACTCAACCATA
TATATTATATTTTTCCCTTCCAAGTTTGCTATGCCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_e21.b1 MSMg01no150_e21.b1 CHROMAT_FILE:
MSMg01no150_e21.b1 PHD_FILE: MSMg01no150_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:50 2005
         (555 letters)



>mm_chr1_147521767_147522726
          Length = 960

 Score =  982 bits (508), Expect = 0.0
 Identities = 544/558 (97%), Gaps = 5/558 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcagaatgaagagaaaaaaatcaaagttaaataaatcgaagttaagtttgatcat- 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 760 gaattcagaatgaagagaaaaaaatcaaagttaaataaatcgaagttaagtttgatcata 701

                                                                       
Query: 62  aaaaactatctagagacaaagaagacattgatatcaagatgggaaagtatcatgcagctc 121
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aaaaaatatctagagacaaagaagacattgatatcaagatgggaaagtatcatgcagctc 641

                                                                       
Query: 122 tgacaatcatcattagcaaagaaggaatatcagaacttttgatgatgcatttaatgatgt 181
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 640 tgacaatcatcattagcaaagaagggatatctgaacttttgatgatgcatttaatgatgt 581

                                                                       
Query: 182 gtaatttttgaactctaacaaacaattgtgaataatcacaggcaaggaaaaggaaggttt 241
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gtaatttctgaactctaacaaacaattgtgaataatcacaggcaaggaaaaggaaggttt 521

                                                                       
Query: 242 aactcaatcacatgacaggttccaatctcctatgt----gacatctgcttaaagcttagc 297
           |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 520 aactcaatcacatgacaggttccaatctcctatgtgacagacatctgcttaaagcttagc 461

                                                                       
Query: 298 catggaaagctacttactcaccccacttccattgttagagttacactggaaatactaata 357
           | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 460 cgtggaaagctacttactcaccccacttccattgttagagtaacactggaaatactaata 401

                                                                       
Query: 358 gtgtctagatcagaacactgttgtaggaactaaacggccaagtgcgtgattaattttggt 417
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtgtctagatcagaaaactgttgtaggaactaaacggccaagtgcgtgattaattttggt 341

                                                                       
Query: 418 tctctcctgttgccttaagaaatcacaactgttttaacaggttaaaatattattgattta 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tctctcctgttgccttaagaaatcacaactgttttaacaggttaaaatattattgattta 281

                                                                       
Query: 478 ttcttttcagctttgtagaacgaagtcaaggtaaagtggtctctgcaggctcactgcttt 537
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttcttttcagctttgtaggacgaagtcaaggtaaagtggtctctgcaggctcactgcttt 221

                             
Query: 538 cttctaaaaaggctgaca 555
           ||||||||| ||||||||
Sbjct: 220 cttctaaaatggctgaca 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 960
Length adjustment: 10
Effective length of query: 545
Effective length of database: 950
Effective search space:   517750
Effective search space used:   517750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)