BAC Information

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BAC

Clone NameMSMg01-150G08
Chromosome1 (Build37)
Map Location 63,098,503 - 63,216,759
singlet/doubletdoublet
Overlap geneA430093A21Rik, Ndufs1, Eef1b2
Upstream genePard3b, LOC667592, Nrp2, LOC100043070
Downstream geneGpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150G08.T7 (MSMg01no150_g08.b1)MSMg01-150G08.TJ (MSMg01no150_g08.g1)
ACCAG352849AG352850
length720755
length of high quality
(start - end)
343 (78 - 420)344 (76 - 419)
definitionCHROMAT_FILE: MSMg01no150_g08.b1 PHD_FILE: MSMg01no150_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:56 2005CHROMAT_FILE: MSMg01no150_g08.g1 PHD_FILE: MSMg01no150_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,098,503 - 63,098,842)(63,216,417 - 63,216,759)
sequence
AACTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTAGTGAGGACGCCGGTAAAACATTCCTGAATGAGACACT
AAGAACATCTAGATTTATTAATTTCTCTATTTTACCTCTCAACTTACAGA
ATAAACTGTAAATTAAAGAATAAATCCATAGGAAACAAAAGAGGTCTTAA
GAAACGTAAGTTTACAAATTCCAGCCACAGTAGCGGGGTTTTACTTGATC
TATTTGCTTCTATTTACCCTGTAACTACGTGTCTAGCCATCTTAAGCGTA
AACCACAGATCATGTGCTAAAGAACTTGATCCTCAACAGCTCTATGAACA
ATAATAAACGGTCTACGGCTGTTCTACATTTTGAGGCCCCAGGTTATTCT
TTTCTTTATATATCTGCCCCCCCCCAAAGGACAGCTATACACCTTGACAC
GGTAGAGATCCAGTGTAACAAGGTGCGTCACTAGTTTGTTTTGTCAAAAA
ATAAAAATAACCACAAAACGAAGCTCATATATAATTTTAAGCTATTAAAA
CACATAGGTAATATAACTCATTACACTCAATACAGCTTCCAGTATAAAAC
TTATCCTTTATGAGGTGATGTTAATAGCATAACTTAATATACCTTTTTCC
CTTAAAATCTACCACACGTATTCCCGAAAGCTCATTGGGTGACCGAAGCT
CTCTAACTACACGCCCCTAT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATTTATTTTATTTGTTTTTTTACC
CTATTGTTTTGATGGCCAGTTCGCACAACTGGCACAGCAGCAAGTAACTT
GATTGAAGTATTTGTTGATGGTCAGTCTGTCATGGTGGAACCAGGAACCA
CTGTTCTGCAGGTAATTACTTTTATGACTCTGTGAGTTTTCTGATTTTTA
TTTTAAAAAATTATTTCCTTCATACTGTTTAGTTTCAATATAGCAATGTG
TCCTGCAAGGCAGGCAAGTGAAGGTAGTACACAGTTTCTCTAAGTTTCTC
CAGAAGTAACCAATTTGCTCATAGACAGACGCTGCTGTATGACTGTGGGT
TATCACAGACCTAAACTCCCCCCCTTTTTCATTTCCAGACTGTGTTTAGA
CATACACCGACAGTAAAACACTGAACGTTATCCACCCCTTCCCCCTCCTA
TTTATTTCCCCCCCCCTCCTTACCCCCCTCACCAAATAATACCCCGGCAC
AATGCCCAGTATTTTGGTTACCTCGCCCGTGCCCATATATGTTTTAAGCC
ATTTTCCACCCTGTCCTCTTTTTCCCCTTTTCTCCGCTCTGCCCCCCCCC
CCTCAATCATTTTTCCCCCCCTTTGACCCTTTTGAATTTCCACCCTTCTT
GTTTACACGCCCCCCTTATATCCACACATCGTATTTTAACACTCCACTTA
TTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_g08.b1 MSMg01no150_g08.b1 CHROMAT_FILE:
MSMg01no150_g08.b1 PHD_FILE: MSMg01no150_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:56 2005
         (343 letters)



>mm_chr1_63098303_63099045
          Length = 743

 Score =  611 bits (316), Expect = e-179
 Identities = 334/340 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacattcctgaatgagacactaagaacatctagatttattaatttctctattttacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacattcctgaatgagacactaagaacatctagatttattaatttctctattttacct 260

                                                                       
Query: 61  ctcaacttacagaataaactgtaaattaaagaataaatccataggaaacaaaagaggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaacttacagaataaactgtaaattaaagaataaatccataggaaacaaaagaggtct 320

                                                                       
Query: 121 taagaaacgtaagtttacaaattccagccacagtagcggggttttacttgatctatttgc 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 taagaaacgtaagtttacaaattccagccacagtagtggggttttacttgatctatttgc 380

                                                                       
Query: 181 ttctatttaccctgtaactacgtgtctagccatcttaagcgtaaaccacagatcatgtgc 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ttctatttaccctgtaactacgtgtctagccatcttaagtgtaaaccacagatcatgtgc 440

                                                                       
Query: 241 taaagaacttgatcctcaacagctctatgaacaataataaacggtctacggctgttctac 300
           |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 441 taaagaacatgatcctcaacagctctatgaacaataataaacggtctaagggtgttctac 500

                                                   
Query: 301 attttgaggccccaggttattcttttctttatatatctgc 340
           |||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 attttgaggccccaggttatccttttctttatatatctgc 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no150_g08.g1 MSMg01no150_g08.g1 CHROMAT_FILE:
MSMg01no150_g08.g1 PHD_FILE: MSMg01no150_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:56 2005
         (344 letters)



>mm_chr1_63216392_63217135
          Length = 744

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%), Gaps = 1/343 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttattttatttgtttttttaccctattgttttgatggccagttcgcacaactggcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aatttattttatttgtttttttaccctattgttttgatggccagttcgcacaactggcac 309

                                                                       
Query: 61  agcagcaagtaacttgattgaagtatttgttgatggtcagtctgtcatggtggaaccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agcagcaagtaacttgattgaagtatttgttgatggtcagtctgtcatggtggaaccagg 249

                                                                       
Query: 121 aaccactgttctgcaggtaattacttttatgactctgtgagttttctgatttttatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaccactgttctgcaggtaattacttttatgactctgtgagttttctgatttttatttta 189

                                                                       
Query: 181 aaaaattatttccttcatactgtttagtttcaatatagcaatgtgtcctgcaaggcaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aaaaattatttccttcatactgtttagtttcaatatagcaatgtgtcctgcaaggcaggc 129

                                                                       
Query: 241 aagtgaagg-tagtacacagtttctctaagtttctccagaagtaaccaatttgctcatag 299
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aagtgaaggacagtacacagtttctctaagtttctccagaagtaaccaatttgctcatag 69

                                                      
Query: 300 acagacgctgctgtatgactgtgggttatcacagacctaaact 342
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  acagacgctgctgtatgactgtgggttatcacagacctaaact 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)