Query= MSMg01no150_l09.b1 MSMg01no150_l09.b1 CHROMAT_FILE:
MSMg01no150_l09.b1 PHD_FILE: MSMg01no150_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:20 2005
(573 letters)
>mm_chr1_127843428_127844396
Length = 969
Score = 946 bits (489), Expect = 0.0
Identities = 546/567 (96%), Gaps = 4/567 (0%)
Strand = Plus / Minus
Query: 7 gaattctttccctctacccataaaaatcagatattttcattaattaccctttttgataat 66
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gaattctttccctctaacaataaaaatcagatattttcattaattaccctttttgataat 710
Query: 67 ttcatacatgtatattcatccctccccatgtaaaaattttggaaaagatgacactaggtt 126
||||| |||||||||||| ||||||| || |||||||||| |||||| |||||||||
Sbjct: 709 ttcattcatgtatattca----tccccatctagaaattttggagaagatggcactaggtt 654
Query: 127 aaatgtgcaatactgaaaagaagaaaacagtctgttggggagaatgcaaacctgcatgta 186
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 653 aaatgtgcaatactgaaaagaagaaaacagtctgttggggagaatgcgaacctgcatgta 594
Query: 187 tgtcccacagtagccaagccagcagggacgggcttggcaaaagcatccttgtgctctatt 246
||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 593 tgtcccacaatagccaagccagcagggatgggcttggtgaaagcatccttgtgctctatt 534
Query: 247 gcagctagaggacagttccatactagaaggctttcttcctgagttcactgtttcttatat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gcagctagaggacagttccatactagaaggctttcttcctgagttcactgtttcttatat 474
Query: 307 tcacccaaggtcgagctaatgggatggaggctggttcatttcctccaaaagaagccaatt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcacccaaggtcgagctaatgggatggaggctggttcatttcctccaaaagaagccaatt 414
Query: 367 taattatggcattcccacgaactgtcattccttagagatcactgggagccatggtttgga 426
|||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 413 taattatggcattctcgggaactgtcattccttagagatcactgggagccatgatttgga 354
Query: 427 accacagaataaaggaattctagtgccatgagtttgcttatggtgtggatgtttccagac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 accacagaataaaggaattctagtgccatgagtttgcttatggtgtggatgtttccagac 294
Query: 487 tctctggattgtcttctccattactgagtcagttgtcccttggtacaagacttccagatc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tctctggattgtcttctccattactgagtcagttgtcccttggtacaagacttccagatc 234
Query: 547 aagtaagacatggtactctttaaagct 573
|||||||||||| ||||||||||||||
Sbjct: 233 aagtaagacatgttactctttaaagct 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 969
Length adjustment: 10
Effective length of query: 563
Effective length of database: 959
Effective search space: 539917
Effective search space used: 539917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_l09.g1 MSMg01no150_l09.g1 CHROMAT_FILE:
MSMg01no150_l09.g1 PHD_FILE: MSMg01no150_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:20 2005
(540 letters)
>mm_chr1_127729627_127730566
Length = 940
Score = 959 bits (496), Expect = 0.0
Identities = 529/540 (97%)
Strand = Plus / Plus
Query: 1 cattagagttaaattgagacaccaagatgtcgtctcaccaacatattcatggccattgct 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 cattagagttaaattgagacaccaagttgtcgtctcaccaacatattcatggccattgct 260
Query: 61 gtcgcttttacttagtggactctcaatctgaagccatggcaggctgggcagccgtggtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcgcttttacttagtggactctcaatctgaagccatggcaggctgggcagccgtggtag 320
Query: 121 acttcctcccaggaaacagtgaggctctcctttgagtgaccagaagcctgggttggagga 180
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttcctcccagggaacagtaaggctctcctttgagtgaccagaagcctgggttggagga 380
Query: 181 agaacaagccagaaggagggggttgtctgcaacctgctgcttcctctgctagattcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 agaacaagccagaaggagggggttgtctgcaacctgctgcttcctctgctatattcttct 440
Query: 241 gtggcctgagcaaagctgctgcaaagtaagattataacatgacacaccaatgtcccagac 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gtggcctgagcaaagctgctgcaaagtaagattatatcatgacacaccaatgtcccagac 500
Query: 301 tcatgagggggaggacattgtgttaaaggcacacatcagccttcaccccacagggaagtt 360
|||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 501 tcatgagggggaagacattgtgttaaaggcacacatcagcctttagggcacagggaagtt 560
Query: 361 tacaagcctcactgtctgggctaatgttcttgttgctctgacaaaagcagcttcaggaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacaagcctcactgtctgggctaatgttcttgttgctctgacaaaagcagcttcaggaag 620
Query: 421 gaaggcattattttggctcacagtttgagggcacggtcatcatggtggagcaggcatggt 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaggcattattttggctcatagtttgagggcacggtcatcatggtggagcaggcatggt 680
Query: 481 ggcaggaacttaaggcacatttgtgatcatagctggtcacattgtgacctctttcaggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcaggaacttaaggcacatttgtgatcatagctggtcacattgtgacctctttcaggag 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
