BAC Information

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BAC

Clone NameMSMg01-150M07
Chromosome1 (Build37)
Map Location 75,324,352 - 75,470,918
singlet/doubletdoublet
Overlap geneDes, Speg, Gmppa, Accn4
Upstream geneGpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep
Downstream geneD1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150M07.T7 (MSMg01no150_m07.b1)MSMg01-150M07.TJ (MSMg01no150_m07.g1)
ACCAG353117AG353118
length738769
length of high quality
(start - end)
233 (42 - 274)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no150_m07.b1 PHD_FILE: MSMg01no150_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:24 2005CHROMAT_FILE: MSMg01no150_m07.g1 PHD_FILE: MSMg01no150_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,470,690 - 75,470,918)(75,324,352 - 75,324,596)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGATCCGCGGAATT
CTTTGTGTCTCCTTATTCCCAATTTCACCAGCACTTTATAAAACCAATCT
CTAGGGAGCAAGGCCTGAGAAGGCCGCTCCCCCTCCCCCTCCCCCTATGC
TCAGCCAAGGTCTGAAAGGTCTTTCCACCCACTCCCCATGAAGGGAACTT
GTGGTGGGGCTGGTACAGGGGGAACTGGGAGCTGGGTCAGGCCTGCTGGG
CCGCCCACTCCCCCTGCCAAGAGGGAGCTGGCCCTGGAAAGAGGGAAAGA
GAACCAGCCCAGTATGTTTGGGTCCCAAGGACTTGCCTTCTGCCATTAGG
GTTAGTACCCTGACTGTCCTGTGTCACCCTCCCCTGCAGTCCCACCCTTC
TATGTCTGTGTCCCCCCCCCACCCACTCCCTAACTATATACCAATGCCCC
GAGGCCCTCCTGTCAGCCCCCCACCTTTCTTCTCTCTTCCTCCTTCTCCT
CCTCCCGTATCTCTAGCCCGTTCTCCCACCCTCTCTTGCCCTCCTGCTTC
GCCATTATCTATTGTTTATTCCCTTCCACCCCCTGTTTTTTCCCCCTTCG
TTCTCCGGTTCCCTCCCCACTTTTTACCCCCCCTCTCTCCCCTCTTTTTT
CCCCCTCTTTTTTTTTTCTCCCCCCCCTTTCCTGTTCCCTTTCCTCCCCC
CCCCCTATAACACCCACTTCCCCTCCCCCCCTTTCTCN
TGATGATAGTGGGAGGCCTGGNGGNCGCCTGGTAGTCATTTGTAGGTGAA
CTATAGAAGTAACAGAAACATTCCTTCTTCCCTCCTCCTCAAGTTCCATC
CAATGTCCTGCCCTTTGCTGCTGGTTTAACTATGAAAATAGAAGCCTTCA
AAGAGCACATGGCTTTTGTTTCTGTCGGGGGAGTCATCTGTGTTCCAGGG
TAAGGCAGCCCCTCTACTTGCAAAGAAGTGTGGAACTGGGATCCAGGACA
GGTTGAGAGGGGCAGAGTCACCAACCCTGGAAACCGGACTGGAAACCAGC
ACTGAGTACAGATCTATTGCTAGTTTCAAGCATTTTATACAGCCGTTGGA
CCAATGATAAAAGGGCCTGAGCTCTGGGGTAGATATTCACACCACAATGA
GGAGGTGCCCCCCCCCCCGCACCTGAGGGCGCTTTCGTGCAGATGGGGGA
AGGAAGCAGGCACCGCTCTGCTCTGGATTGGGACCTGCCGCTCACGAGTT
TCTCAGCATCCTCCCTCTCTTGTGTCCCATGGCCTTTTATAGTTATCCGC
GCCCCTTCCCACTATTTAAAGCCGCGACTCACCTCCCTCCCCCATTTTTA
CGGTTTTCACCCCCTCTACCCCCATACCCTCCATTCTCCCCCCTTTTTAT
TATCCTTTTCCCCCCACCGTTTTTTTCTTTCTTTTTTTTTTGTGCCCTGC
ATTTGTCTCTATCTCAATACCGCACATTCATTCCTCTTCGTCCTTATTTC
CCCCTCTCCTCTCCCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_m07.b1 MSMg01no150_m07.b1 CHROMAT_FILE:
MSMg01no150_m07.b1 PHD_FILE: MSMg01no150_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:24 2005
         (233 letters)



>mm_chr1_75470385_75471017
          Length = 633

 Score =  420 bits (217), Expect = e-122
 Identities = 226/229 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtgtctccttattcccaatttcaccagcactttataaaaccaatctctagg 64
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaattctttgtgcctctttattcccaatttcaccagcactttataaaaccaatctctagg 475

                                                                       
Query: 65  gagcaaggcctgagaaggccgctccccctccccctccccctatgctcagccaaggtctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gagcaaggcctgagaaggccgctccccctccccctccccctatgctcagccaaggtctga 415

                                                                       
Query: 125 aaggtctttccacccactccccatgaagggaacttgtggtggggctggtacagggggaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aaggtctttccacccactccccatgaagggaacttgtggtggggctggtacagggggaac 355

                                                            
Query: 185 tgggagctgggtcaggcctgctgggccgcccactccccctgccaagagg 233
           ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgggagctgggccaggcctgctgggccgcccactccccctgccaagagg 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no150_m07.g1 MSMg01no150_m07.g1 CHROMAT_FILE:
MSMg01no150_m07.g1 PHD_FILE: MSMg01no150_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:25 2005
         (245 letters)



>mm_chr1_75324152_75324796
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttcttccctcctcctcaagttccatccaatgtcctgccctttgctgctggtttaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttcttccctcctcctcaagttccatccaatgtcctgccctttgctgctggtttaacta 260

                                                                       
Query: 61  tgaaaatagaagccttcaaagagcacatggcttttgtttctgtcgggggagtcatctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaaatagaagccttcaaagagcacatggcttttgtttctgtcgggggagtcatctgtg 320

                                                                       
Query: 121 ttccagggtaaggcagcccctctacttgcaaagaagtgtggaactgggatccaggacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccagggtaaggcagcccctctacttgcaaagaagtgtggaactgggatccaggacagg 380

                                                                       
Query: 181 ttgagaggggcagagtcaccaaccctggaaaccggactggaaaccagcactgagtacaga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagaggggcagagtcaccaaccctggaaaccggactggaaaccagcactgagtacaga 440

                
Query: 241 tctat 245
           |||||
Sbjct: 441 tctat 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)